Zinc in PDB 5jne: E2-Sumo-SIZ1 E3-Sumo-Pcna Complex

The structure of E2-Sumo-SIZ1 E3-Sumo-Pcna Complex, PDB code: 5jne was solved by C.D.Lima, F.C.Streich Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.39 / 2.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	93.421, 205.882, 142.501, 90.00, 95.30, 90.00
R / Rfree (%)	21.2 / 25

The binding sites of Zinc atom in the E2-Sumo-SIZ1 E3-Sumo-Pcna Complex (pdb code 5jne). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the E2-Sumo-SIZ1 E3-Sumo-Pcna Complex, PDB code: 5jne:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the E2-Sumo-SIZ1 E3-Sumo-Pcna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of E2-Sumo-SIZ1 E3-Sumo-Pcna Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:59.4 occ:1.00 NE2 A:HIS379 2.0 42.0 1.0 SG A:CYS400 2.3 39.8 1.0 SG A:CYS403 2.3 41.3 1.0 SG A:CYS377 2.3 43.6 1.0 CD2 A:HIS379 3.0 50.5 1.0 CE1 A:HIS379 3.1 43.4 1.0 CB A:CYS400 3.1 37.5 1.0 CB A:CYS377 3.1 42.3 1.0 CB A:CYS403 3.6 44.3 1.0 N A:CYS403 4.0 46.8 1.0 CA A:CYS377 4.0 44.9 1.0 CG A:HIS379 4.1 49.2 1.0 ND1 A:HIS379 4.1 44.6 1.0 CA A:CYS403 4.4 45.0 1.0 CD1 A:ILE405 4.4 64.3 1.0 CG1 A:ILE405 4.5 49.1 1.0 CB A:VAL402 4.5 51.9 1.0 CA A:CYS400 4.6 37.4 1.0 C A:VAL402 4.9 46.4 1.0 C A:CYS377 5.0 50.2 1.0

Zinc binding site 2 out of 2 in the E2-Sumo-SIZ1 E3-Sumo-Pcna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of E2-Sumo-SIZ1 E3-Sumo-Pcna Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn601 b:75.7 occ:1.00 NE2 E:HIS379 2.0 70.6 1.0 SG E:CYS400 2.3 60.9 1.0 SG E:CYS377 2.3 77.7 1.0 SG E:CYS403 2.3 70.7 1.0 CD2 E:HIS379 2.9 80.5 1.0 CB E:CYS400 3.0 64.0 1.0 CE1 E:HIS379 3.1 77.5 1.0 CB E:CYS377 3.1 84.7 1.0 CB E:CYS403 3.8 71.0 1.0 N E:CYS403 4.0 70.1 1.0 CA E:CYS377 4.1 78.4 1.0 CG E:HIS379 4.1 93.7 1.0 ND1 E:HIS379 4.1 89.7 1.0 CG1 E:ILE405 4.5 69.5 1.0 CD1 E:ILE405 4.5 77.3 1.0 CA E:CYS400 4.5 59.9 1.0 CA E:CYS403 4.5 70.7 1.0 CB E:VAL402 4.5 77.8 1.0 CD1 E:ILE407 4.8 67.1 1.0

F.C.Streich, C.D.Lima. Capturing A Substrate in An Activated Ring E3/E2-Sumo Complex. Nature V. 536 304 2016.
ISSN: ESSN 1476-4687
PubMed: 27509863
DOI: 10.1038/NATURE19071