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Zinc in PDB 5h4g: Structure of Pin-Domain Protein (VAPC4 Toxin) From Pyrococcus Horikoshii Determined at 1.77 A Resolution

Protein crystallography data

The structure of Structure of Pin-Domain Protein (VAPC4 Toxin) From Pyrococcus Horikoshii Determined at 1.77 A Resolution, PDB code: 5h4g was solved by A.Biswas, K.Hatti, N.Srinivasan, M.R.N.Murthy, K.Sekar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.94 / 1.77
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.780, 44.640, 52.370, 90.00, 103.40, 90.00
R / Rfree (%) 16.7 / 22.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Pin-Domain Protein (VAPC4 Toxin) From Pyrococcus Horikoshii Determined at 1.77 A Resolution (pdb code 5h4g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Pin-Domain Protein (VAPC4 Toxin) From Pyrococcus Horikoshii Determined at 1.77 A Resolution, PDB code: 5h4g:

Zinc binding site 1 out of 1 in 5h4g

Go back to Zinc Binding Sites List in 5h4g
Zinc binding site 1 out of 1 in the Structure of Pin-Domain Protein (VAPC4 Toxin) From Pyrococcus Horikoshii Determined at 1.77 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Pin-Domain Protein (VAPC4 Toxin) From Pyrococcus Horikoshii Determined at 1.77 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:35.2
occ:0.59
N B:LEU72 2.9 21.9 1.0
O B:HOH241 2.9 27.8 1.0
N A:LEU72 3.0 18.3 1.0
O A:HOH322 3.2 31.8 1.0
CB A:PRO71 3.6 24.0 1.0
CB B:LEU72 3.6 24.7 1.0
CB B:PRO71 3.7 19.7 1.0
CA B:LEU72 3.7 22.5 1.0
CB A:LEU72 3.7 20.7 1.0
C B:PRO71 3.8 21.0 1.0
CA A:LEU72 3.8 20.1 1.0
CA B:PRO71 3.8 19.8 1.0
CA A:PRO71 3.8 21.5 1.0
C A:PRO71 3.9 20.9 1.0
O A:LEU72 4.1 20.3 1.0
O B:LEU72 4.1 22.9 1.0
CG2 A:ILE39 4.1 20.4 1.0
C B:LEU72 4.1 22.2 1.0
C A:LEU72 4.2 21.4 1.0
CG2 B:ILE39 4.2 19.3 1.0
O B:PRO71 5.0 21.2 1.0

Reference:

K.Hatti, A.Biswas, S.Chaudhary, V.Dadireddy, K.Sekar, N.Srinivasan, M.R.N.Murthy. Structure Determination of Contaminant Proteins Using the Marathonmr Procedure J. Struct. Biol. V. 197 372 2017.
ISSN: ESSN 1095-8657
PubMed: 28167161
DOI: 10.1016/J.JSB.2017.01.005
Page generated: Wed Dec 16 06:20:02 2020

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