Atomistry » Zinc » PDB 4ylp-4z0q » 4yxp
Atomistry »
  Zinc »
    PDB 4ylp-4z0q »
      4yxp »

Zinc in PDB 4yxp: The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer.

Protein crystallography data

The structure of The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer., PDB code: 4yxp was solved by R.B.Tunnicliffe, M.Schacht, C.W.Levy, T.A.Jowitt, R.M.Sandri-Goldin, A.P.Golovanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.55 / 1.92
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 99.330, 133.620, 44.970, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.3

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer. (pdb code 4yxp). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer., PDB code: 4yxp:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4yxp

Go back to Zinc Binding Sites List in 4yxp
Zinc binding site 1 out of 2 in the The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:24.5
occ:0.71
NE2 A:HIS479 2.1 33.2 1.0
SG A:CYS400 2.3 31.4 1.0
SG A:CYS488 2.3 31.6 1.0
SG A:CYS483 2.4 33.1 1.0
CD2 A:HIS479 3.0 32.0 1.0
CE1 A:HIS479 3.1 32.8 1.0
CB A:CYS488 3.2 30.7 1.0
CB A:CYS400 3.3 29.3 1.0
CB A:CYS483 3.3 35.2 1.0
O A:HOH874 3.7 44.4 1.0
CG A:HIS479 4.1 30.8 1.0
ND1 A:HIS479 4.2 31.3 1.0
O A:HOH857 4.3 34.2 1.0
O A:HOH867 4.4 40.5 1.0
CA A:CYS400 4.5 28.5 1.0
C A:CYS400 4.6 26.5 1.0
O A:HOH840 4.6 35.6 1.0
CA A:CYS488 4.7 28.4 1.0
N A:TYR401 4.7 24.9 1.0
CA A:CYS483 4.7 37.6 1.0
CB A:SER485 4.8 32.1 1.0
O A:HOH820 4.9 39.0 1.0
O A:CYS400 5.0 26.4 1.0

Zinc binding site 2 out of 2 in 4yxp

Go back to Zinc Binding Sites List in 4yxp
Zinc binding site 2 out of 2 in the The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of the Folded Domain of the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:27.2
occ:0.84
NE2 B:HIS479 2.1 33.8 1.0
SG B:CYS400 2.3 35.8 1.0
SG B:CYS483 2.3 32.6 1.0
SG B:CYS488 2.4 32.3 1.0
CD2 B:HIS479 3.0 33.8 1.0
CE1 B:HIS479 3.1 34.8 1.0
CB B:CYS483 3.2 34.7 1.0
CB B:CYS400 3.3 32.5 1.0
CB B:CYS488 3.3 31.3 1.0
ND1 B:HIS479 4.1 34.4 1.0
CG B:HIS479 4.1 34.3 1.0
O B:HOH836 4.3 29.8 1.0
O B:HOH816 4.4 42.1 1.0
CA B:CYS400 4.5 30.5 1.0
C B:CYS400 4.5 30.0 1.0
CA B:CYS483 4.7 38.3 1.0
O B:HOH826 4.8 33.4 1.0
CA B:CYS488 4.8 29.2 1.0
N B:TYR401 4.8 29.7 1.0
O B:CYS400 4.9 30.8 1.0
CB B:SER485 4.9 32.9 1.0

Reference:

R.B.Tunnicliffe, M.Schacht, C.Levy, T.A.Jowitt, R.M.Sandri-Goldin, A.P.Golovanov. The Structure of the Folded Domain From the Signature Multifunctional Protein ICP27 From Herpes Simplex Virus-1 Reveals An Intertwined Dimer. Sci Rep V. 5 11234 2015.
ISSN: ESSN 2045-2322
PubMed: 26062451
DOI: 10.1038/SREP11234
Page generated: Wed Dec 16 05:58:24 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy