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Zinc in PDB 4wai: Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis.

Protein crystallography data

The structure of Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis., PDB code: 4wai was solved by T.A.Sysoeva, L.B.Bane, D.Xiao, R.Gaudet, B.M.Burton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.54 / 2.43
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.483, 123.579, 41.759, 90.00, 93.92, 90.00
R / Rfree (%) 20.8 / 25.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis. (pdb code 4wai). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis., PDB code: 4wai:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 4wai

Go back to Zinc Binding Sites List in 4wai
Zinc binding site 1 out of 4 in the Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:0.3
occ:1.00
SG A:CYS88 2.3 0.1 1.0
SG A:CYS25 2.3 0.4 1.0
SG A:CYS27 2.4 89.8 1.0
SG A:CYS30 2.4 0.2 1.0
CB A:CYS25 2.9 0.7 1.0
CB A:CYS30 3.4 88.0 1.0
CB A:CYS88 3.6 0.7 1.0
CB A:CYS27 3.7 98.2 1.0
N A:CYS27 4.1 93.8 1.0
N A:CYS30 4.1 82.0 1.0
CA A:CYS25 4.2 0.8 1.0
N A:GLN89 4.3 0.0 1.0
C A:CYS25 4.3 0.6 1.0
CG A:GLN89 4.3 0.1 1.0
CA A:CYS30 4.3 83.7 1.0
CA A:CYS88 4.4 0.2 1.0
CA A:CYS27 4.4 93.8 1.0
O A:CYS25 4.5 94.5 1.0
N A:THR26 4.7 99.7 1.0
O A:CYS27 4.8 80.2 1.0
CD A:GLN89 4.8 1.0 1.0
C A:CYS88 4.9 0.8 1.0
C A:CYS27 4.9 86.1 1.0

Zinc binding site 2 out of 4 in 4wai

Go back to Zinc Binding Sites List in 4wai
Zinc binding site 2 out of 4 in the Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn101

b:99.3
occ:1.00
SG C:CYS88 2.3 0.0 1.0
SG C:CYS25 2.3 99.7 1.0
SG C:CYS27 2.4 99.5 1.0
SG C:CYS30 2.5 0.1 1.0
CB C:CYS30 3.3 94.7 1.0
CB C:CYS25 3.3 0.4 1.0
CB C:CYS88 3.5 0.1 1.0
CB C:CYS27 3.6 0.4 1.0
CA C:CYS88 3.9 0.9 1.0
N C:GLN89 3.9 0.4 1.0
N C:CYS30 3.9 93.3 1.0
N C:CYS27 4.0 0.1 1.0
CA C:CYS30 4.1 91.6 1.0
CA C:CYS27 4.3 0.9 1.0
CG C:GLN89 4.4 0.1 1.0
C C:CYS88 4.4 0.5 1.0
C C:CYS25 4.5 97.3 1.0
CA C:CYS25 4.5 99.9 1.0
O C:CYS25 4.7 94.1 1.0
O C:CYS27 4.8 96.9 1.0
C C:CYS27 4.8 0.5 1.0
N C:THR26 4.8 98.2 1.0
CB C:GLN89 4.9 0.8 1.0
CD C:GLN89 4.9 0.6 1.0

Zinc binding site 3 out of 4 in 4wai

Go back to Zinc Binding Sites List in 4wai
Zinc binding site 3 out of 4 in the Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:0.9
occ:1.00
SG B:CYS27 2.3 0.2 1.0
SG B:CYS88 2.4 0.8 1.0
SG B:CYS30 2.4 0.2 1.0
SG B:CYS25 2.5 0.1 1.0
CB B:CYS88 3.1 0.3 1.0
CB B:CYS25 3.2 0.8 1.0
CB B:CYS30 3.2 96.8 1.0
CB B:CYS27 3.6 97.3 1.0
N B:CYS30 3.8 92.9 1.0
CA B:CYS30 4.1 92.1 1.0
CA B:CYS88 4.1 0.3 1.0
N B:CYS27 4.1 95.3 1.0
CA B:CYS27 4.4 96.0 1.0
CA B:CYS25 4.4 0.8 1.0
C B:CYS25 4.5 0.0 1.0
O B:CYS27 4.6 90.7 1.0
CB B:VAL29 4.7 97.5 1.0
C B:CYS27 4.7 93.9 1.0
C B:CYS88 4.7 0.3 1.0
O B:CYS25 4.7 92.7 1.0
N B:THR26 4.8 0.2 1.0
C B:VAL29 4.9 89.9 1.0

Zinc binding site 4 out of 4 in 4wai

Go back to Zinc Binding Sites List in 4wai
Zinc binding site 4 out of 4 in the Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn101

b:0.8
occ:1.00
SG D:CYS27 2.3 99.2 1.0
SG D:CYS25 2.3 0.6 1.0
SG D:CYS30 2.4 0.0 1.0
SG D:CYS88 2.5 0.7 1.0
CB D:CYS25 3.0 0.9 1.0
CB D:CYS88 3.4 0.0 1.0
CB D:CYS27 3.5 0.9 1.0
CB D:CYS30 3.6 96.0 1.0
N D:CYS27 4.1 0.8 1.0
N D:CYS30 4.2 93.2 1.0
CA D:CYS25 4.3 0.9 1.0
CA D:CYS88 4.3 0.1 1.0
CA D:CYS27 4.3 0.8 1.0
C D:CYS25 4.4 0.2 1.0
CA D:CYS30 4.5 91.8 1.0
N D:THR26 4.7 0.2 1.0
O D:CYS25 4.8 0.1 1.0
O D:CYS27 4.9 94.2 1.0
CB D:VAL29 4.9 99.6 1.0
C D:CYS27 4.9 0.2 1.0

Reference:

T.A.Sysoeva, L.B.Bane, D.Y.Xiao, B.Bose, S.S.Chilton, R.Gaudet, B.M.Burton. Structural Characterization of the Late Competence Protein Comfb From Bacillus Subtilis. Biosci.Rep. 2014.
ISSN: ISSN 0144-8463
PubMed: 25423369
DOI: 10.1042/BSR20140174
Page generated: Wed Dec 16 05:50:44 2020

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