Zinc in PDB 4ucl: X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain

The structure of X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain, PDB code: 4ucl was solved by G.C.Paesen, A.Collet, C.Sallamand, F.Debart, J.J.Vasseur, B.Canard, E.Decroly, J.M.Grimes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	91.46 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	78.780, 83.410, 182.920, 90.00, 90.00, 90.00
R / Rfree (%)	18.9 / 21.7

The binding sites of Zinc atom in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain (pdb code 4ucl). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain, PDB code: 4ucl:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2408 b:97.6 occ:1.00 NE2 A:HIS1766 2.1 89.5 1.0 NE2 A:HIS1798 2.2 93.3 1.0 SG A:CYS1802 2.2 99.9 1.0 SG A:CYS1805 2.3 95.1 1.0 CD2 A:HIS1766 2.8 90.7 1.0 CB A:CYS1802 3.1 96.1 1.0 CE1 A:HIS1798 3.1 93.6 1.0 CD2 A:HIS1798 3.2 92.5 1.0 CE1 A:HIS1766 3.2 89.5 1.0 CB A:CYS1805 3.4 93.6 1.0 N A:CYS1805 3.9 97.4 1.0 CG A:HIS1766 4.0 89.9 1.0 ND1 A:HIS1798 4.2 93.5 1.0 CG A:HIS1798 4.2 90.6 1.0 ND1 A:HIS1766 4.2 91.3 1.0 CA A:CYS1805 4.3 96.1 1.0 CB A:ILE1804 4.4 99.2 1.0 CG A:LEU1773 4.4 88.7 1.0 CA A:CYS1802 4.5 98.0 1.0 CD2 A:LEU1773 4.6 89.2 1.0 CG2 A:ILE1804 4.8 98.8 1.0 C A:ILE1804 4.9 0.6 1.0 C A:CYS1802 4.9 0.8 1.0 CG2 A:ILE1765 4.9 87.1 1.0 O A:CYS1802 4.9 99.9 1.0 N A:LEU1773 5.0 88.4 1.0

Zinc binding site 2 out of 2 in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn2408 b:98.9 occ:1.00 NE2 B:HIS1766 2.1 99.7 1.0 NE2 B:HIS1798 2.1 93.4 1.0 SG B:CYS1805 2.3 0.8 1.0 SG B:CYS1802 2.4 0.7 1.0 CD2 B:HIS1766 2.9 0.7 1.0 CD2 B:HIS1798 3.1 92.7 1.0 CE1 B:HIS1798 3.1 93.7 1.0 CB B:CYS1802 3.1 0.5 1.0 CE1 B:HIS1766 3.2 99.6 1.0 CB B:CYS1805 3.4 99.6 1.0 N B:CYS1805 4.0 0.3 1.0 CG B:HIS1766 4.1 100.0 1.0 CG B:HIS1798 4.2 91.5 1.0 ND1 B:HIS1798 4.2 94.0 1.0 ND1 B:HIS1766 4.2 0.4 1.0 CG B:LEU1773 4.3 89.3 1.0 CA B:CYS1805 4.3 0.8 1.0 CD2 B:LEU1773 4.4 89.5 1.0 CB B:ILE1804 4.5 0.3 1.0 CA B:CYS1802 4.6 0.6 1.0 CG2 B:ILE1765 4.8 97.5 1.0 N B:LEU1773 4.9 90.2 1.0 CD1 B:LEU1773 4.9 87.7 1.0 CG2 B:ILE1804 4.9 0.0 1.0 C B:ILE1804 5.0 0.5 1.0

G.C.Paesen, A.Collet, C.Sallamand, F.Debart, J.J.Vasseur, B.Canard, E.Decroly, J.M.Grimes. X-Ray Structure and Activities of An Essential Mononegavirales L-Protein Domain. Nat.Commun. V. 6 8749 2015.
ISSN: ESSN 2041-1723
PubMed: 26549102
DOI: 10.1038/NCOMMS9749