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Zinc in PDB 4uck: X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain

Protein crystallography data

The structure of X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain, PDB code: 4uck was solved by G.C.Paesen, A.Collet, C.Sallamand, F.Debart, J.J.Vasseur, B.Canard, E.Decroly, J.M.Grimes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.51 / 2.66
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 80.340, 84.350, 181.740, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 20.5

Zinc Binding Sites:

The binding sites of Zinc atom in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain (pdb code 4uck). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain, PDB code: 4uck:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4uck

Go back to Zinc Binding Sites List in 4uck
Zinc binding site 1 out of 2 in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2408

b:78.8
occ:1.00
NE2 A:HIS1766 2.1 75.7 1.0
NE2 A:HIS1798 2.1 76.5 1.0
SG A:CYS1802 2.2 84.4 1.0
SG A:CYS1805 2.3 79.7 1.0
CD2 A:HIS1766 2.8 76.5 1.0
CB A:CYS1802 3.0 81.1 1.0
CD2 A:HIS1798 3.1 76.1 1.0
CE1 A:HIS1798 3.1 76.4 1.0
CE1 A:HIS1766 3.3 75.2 1.0
CB A:CYS1805 3.5 78.1 1.0
N A:CYS1805 3.9 81.5 1.0
CG A:HIS1766 4.0 75.2 1.0
CD1 A:LEU1773 4.1 71.2 1.0
CG A:HIS1798 4.1 74.2 1.0
ND1 A:HIS1798 4.1 76.6 1.0
ND1 A:HIS1766 4.2 76.4 1.0
CA A:CYS1805 4.3 80.2 1.0
CB A:ILE1804 4.3 82.5 1.0
CA A:CYS1802 4.5 83.4 1.0
CG2 A:ILE1804 4.6 81.4 1.0
C A:ILE1804 4.8 87.0 1.0
C A:CYS1802 4.9 88.9 1.0
CG2 A:ILE1765 4.9 70.9 1.0
CA A:ILE1804 4.9 81.9 1.0
O A:CYS1802 5.0 89.1 1.0
N A:ILE1804 5.0 83.6 1.0

Zinc binding site 2 out of 2 in 4uck

Go back to Zinc Binding Sites List in 4uck
Zinc binding site 2 out of 2 in the X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of X-Ray Structure and Activities of An Essential Mononegavirales L- Protein Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn2408

b:77.8
occ:1.00
NE2 B:HIS1766 2.1 78.1 1.0
NE2 B:HIS1798 2.1 66.5 1.0
SG B:CYS1805 2.2 77.4 1.0
SG B:CYS1802 2.3 81.4 1.0
CD2 B:HIS1766 2.8 78.8 1.0
CD2 B:HIS1798 3.0 66.8 1.0
CE1 B:HIS1798 3.1 66.6 1.0
CB B:CYS1802 3.1 77.4 1.0
CE1 B:HIS1766 3.2 77.7 1.0
CB B:CYS1805 3.5 75.5 1.0
N B:CYS1805 3.9 79.0 1.0
CD1 B:LEU1773 4.0 74.6 1.0
CG B:HIS1766 4.0 77.8 1.0
CG B:HIS1798 4.1 66.1 1.0
ND1 B:HIS1798 4.2 67.8 1.0
ND1 B:HIS1766 4.2 78.9 1.0
CA B:CYS1805 4.3 77.6 1.0
CB B:ILE1804 4.4 77.0 1.0
CA B:CYS1802 4.6 78.6 1.0
CG2 B:ILE1804 4.7 75.0 1.0
C B:ILE1804 4.8 83.2 1.0
CG2 B:ILE1765 4.9 79.8 1.0
N B:LEU1773 4.9 74.3 1.0
CG B:LEU1773 4.9 74.4 1.0
C B:CYS1802 5.0 82.7 1.0
CB B:LEU1773 5.0 71.7 1.0

Reference:

G.C.Paesen, A.Collet, C.Sallamand, F.Debart, J.J.Vasseur, B.Canard, E.Decroly, J.M.Grimes. X-Ray Structure and Activities of An Essential Mononegavirales L-Protein Domain. Nat.Commun. V. 6 8749 2015.
ISSN: ESSN 2041-1723
PubMed: 26549102
DOI: 10.1038/NCOMMS9749
Page generated: Wed Dec 16 05:48:10 2020

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