Zinc in PDB 4tpp: 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
Enzymatic activity of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
All present enzymatic activity of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors:
3.1.4.17;
3.1.4.35;
Protein crystallography data
The structure of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors, PDB code: 4tpp
was solved by
S.Chmait,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.73 /
2.65
|
Space group
|
F 2 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
253.216,
253.216,
253.216,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.7 /
19.8
|
Zinc Binding Sites:
The binding sites of Zinc atom in the 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
(pdb code 4tpp). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors, PDB code: 4tpp:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 4tpp
Go back to
Zinc Binding Sites List in 4tpp
Zinc binding site 1 out
of 4 in the 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1001
b:49.3
occ:1.00
|
OD2
|
A:ASP554
|
2.0
|
49.9
|
1.0
|
OD1
|
A:ASP664
|
2.0
|
54.6
|
1.0
|
NE2
|
A:HIS553
|
2.2
|
38.8
|
1.0
|
NE2
|
A:HIS519
|
2.3
|
39.0
|
1.0
|
CG
|
A:ASP664
|
2.9
|
43.7
|
1.0
|
CD2
|
A:HIS553
|
3.1
|
46.4
|
1.0
|
CG
|
A:ASP554
|
3.1
|
46.0
|
1.0
|
OD2
|
A:ASP664
|
3.1
|
53.2
|
1.0
|
O
|
A:HOH1133
|
3.1
|
37.1
|
1.0
|
ZN
|
A:ZN1002
|
3.2
|
53.5
|
1.0
|
CD2
|
A:HIS519
|
3.2
|
45.0
|
1.0
|
CE1
|
A:HIS553
|
3.2
|
50.0
|
1.0
|
CE1
|
A:HIS519
|
3.3
|
41.6
|
1.0
|
CD2
|
A:HIS515
|
3.5
|
52.2
|
1.0
|
OD1
|
A:ASP554
|
3.6
|
45.7
|
1.0
|
NE2
|
A:HIS515
|
3.8
|
48.5
|
1.0
|
CG
|
A:HIS553
|
4.2
|
36.0
|
1.0
|
ND1
|
A:HIS553
|
4.3
|
30.0
|
1.0
|
CB
|
A:ASP664
|
4.3
|
40.2
|
1.0
|
CB
|
A:ASP554
|
4.3
|
39.4
|
1.0
|
CG
|
A:HIS519
|
4.4
|
44.3
|
1.0
|
ND1
|
A:HIS519
|
4.4
|
45.8
|
1.0
|
O
|
A:HOH1144
|
4.4
|
40.2
|
1.0
|
CG
|
A:HIS515
|
4.8
|
47.4
|
1.0
|
CA
|
A:ASP664
|
4.8
|
46.3
|
1.0
|
O
|
A:ASP664
|
4.9
|
56.2
|
1.0
|
|
Zinc binding site 2 out
of 4 in 4tpp
Go back to
Zinc Binding Sites List in 4tpp
Zinc binding site 2 out
of 4 in the 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn1002
b:53.5
occ:1.00
|
OD1
|
A:ASP554
|
2.0
|
45.7
|
1.0
|
O
|
A:HOH1144
|
2.1
|
40.2
|
1.0
|
O
|
A:HOH1147
|
2.2
|
49.5
|
1.0
|
O
|
A:HOH1145
|
2.5
|
53.1
|
1.0
|
CG
|
A:ASP554
|
2.8
|
46.0
|
1.0
|
OD2
|
A:ASP554
|
3.0
|
49.9
|
1.0
|
ZN
|
A:ZN1001
|
3.2
|
49.3
|
1.0
|
O
|
A:HOH1133
|
3.2
|
37.1
|
1.0
|
O
|
A:HOH1132
|
3.3
|
60.8
|
1.0
|
O
|
A:HOH1143
|
3.8
|
63.7
|
1.0
|
CD2
|
A:HIS553
|
4.0
|
46.4
|
1.0
|
OD2
|
A:ASP664
|
4.1
|
53.2
|
1.0
|
NE2
|
A:HIS515
|
4.1
|
48.5
|
1.0
|
CD2
|
A:HIS515
|
4.1
|
52.2
|
1.0
|
NE2
|
A:HIS553
|
4.2
|
38.8
|
1.0
|
CB
|
A:ASP554
|
4.3
|
39.4
|
1.0
|
O
|
A:THR623
|
4.4
|
57.0
|
1.0
|
CD2
|
A:HIS557
|
4.4
|
44.7
|
1.0
|
O
|
A:HIS553
|
4.4
|
50.7
|
1.0
|
NE2
|
A:HIS585
|
4.5
|
48.5
|
1.0
|
OG1
|
A:THR623
|
4.5
|
54.6
|
1.0
|
NE2
|
A:HIS557
|
4.5
|
44.0
|
1.0
|
CB
|
A:THR623
|
4.6
|
38.9
|
1.0
|
OE2
|
A:GLU582
|
4.6
|
50.2
|
1.0
|
OD1
|
A:ASP664
|
4.6
|
54.6
|
1.0
|
CD2
|
A:HIS585
|
4.8
|
45.9
|
1.0
|
CG
|
A:ASP664
|
4.8
|
43.7
|
1.0
|
CA
|
A:ASP554
|
4.8
|
49.1
|
1.0
|
|
Zinc binding site 3 out
of 4 in 4tpp
Go back to
Zinc Binding Sites List in 4tpp
Zinc binding site 3 out
of 4 in the 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn801
b:48.3
occ:1.00
|
OD1
|
B:ASP664
|
1.9
|
44.6
|
1.0
|
OD2
|
B:ASP554
|
2.0
|
49.6
|
1.0
|
NE2
|
B:HIS553
|
2.1
|
40.3
|
1.0
|
NE2
|
B:HIS519
|
2.4
|
46.5
|
1.0
|
CG
|
B:ASP664
|
2.8
|
45.7
|
1.0
|
CD2
|
B:HIS553
|
2.9
|
45.4
|
1.0
|
OD2
|
B:ASP664
|
3.0
|
52.9
|
1.0
|
CG
|
B:ASP554
|
3.0
|
48.8
|
1.0
|
CE1
|
B:HIS553
|
3.1
|
48.0
|
1.0
|
ZN
|
B:ZN802
|
3.2
|
54.1
|
1.0
|
CE1
|
B:HIS519
|
3.3
|
41.2
|
1.0
|
CD2
|
B:HIS519
|
3.4
|
47.6
|
1.0
|
O
|
B:HOH922
|
3.5
|
33.7
|
1.0
|
OD1
|
B:ASP554
|
3.6
|
50.5
|
1.0
|
O
|
B:HOH923
|
3.9
|
50.7
|
1.0
|
NE2
|
B:HIS515
|
4.1
|
60.2
|
1.0
|
CG
|
B:HIS553
|
4.1
|
34.2
|
1.0
|
CB
|
B:ASP664
|
4.2
|
37.1
|
1.0
|
O
|
B:HOH920
|
4.2
|
62.8
|
1.0
|
ND1
|
B:HIS553
|
4.2
|
30.3
|
1.0
|
O
|
B:HOH937
|
4.2
|
70.8
|
1.0
|
CB
|
B:ASP554
|
4.2
|
43.6
|
1.0
|
CD2
|
B:HIS515
|
4.4
|
61.5
|
1.0
|
ND1
|
B:HIS519
|
4.5
|
44.3
|
1.0
|
CG
|
B:HIS519
|
4.5
|
40.6
|
1.0
|
CE1
|
B:HIS515
|
4.6
|
60.2
|
1.0
|
CA
|
B:ASP664
|
4.7
|
44.8
|
1.0
|
O
|
B:ASP664
|
4.8
|
47.9
|
1.0
|
CG
|
B:HIS515
|
5.0
|
44.9
|
1.0
|
|
Zinc binding site 4 out
of 4 in 4tpp
Go back to
Zinc Binding Sites List in 4tpp
Zinc binding site 4 out
of 4 in the 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn802
b:54.1
occ:1.00
|
O
|
B:HOH923
|
1.8
|
50.7
|
1.0
|
OD1
|
B:ASP554
|
2.0
|
50.5
|
1.0
|
O
|
B:HOH936
|
2.0
|
40.0
|
1.0
|
O
|
B:HOH937
|
2.3
|
70.8
|
1.0
|
O
|
B:HOH922
|
2.6
|
33.7
|
1.0
|
CG
|
B:ASP554
|
2.8
|
48.8
|
1.0
|
OD2
|
B:ASP554
|
2.9
|
49.6
|
1.0
|
ZN
|
B:ZN801
|
3.2
|
48.3
|
1.0
|
OE2
|
B:GLU582
|
3.8
|
57.5
|
1.0
|
CE1
|
B:HIS515
|
3.9
|
60.2
|
1.0
|
CD2
|
B:HIS553
|
4.0
|
45.4
|
1.0
|
OD2
|
B:ASP664
|
4.1
|
52.9
|
1.0
|
CD2
|
B:HIS557
|
4.1
|
48.1
|
1.0
|
NE2
|
B:HIS557
|
4.2
|
41.6
|
1.0
|
NE2
|
B:HIS553
|
4.2
|
40.3
|
1.0
|
CB
|
B:ASP554
|
4.2
|
43.6
|
1.0
|
O
|
B:THR623
|
4.4
|
55.3
|
1.0
|
OG1
|
B:THR623
|
4.4
|
56.5
|
1.0
|
NE2
|
B:HIS515
|
4.4
|
60.2
|
1.0
|
O
|
B:HOH921
|
4.4
|
51.8
|
1.0
|
NE2
|
B:HIS585
|
4.4
|
48.1
|
1.0
|
O
|
B:HIS553
|
4.4
|
51.7
|
1.0
|
ND1
|
B:HIS515
|
4.4
|
64.3
|
1.0
|
CB
|
B:THR623
|
4.6
|
45.8
|
1.0
|
O
|
B:HOH919
|
4.6
|
60.4
|
1.0
|
OD1
|
B:ASP664
|
4.6
|
44.6
|
1.0
|
CD2
|
B:HIS585
|
4.7
|
48.7
|
1.0
|
CG
|
B:ASP664
|
4.8
|
45.7
|
1.0
|
CA
|
B:ASP554
|
4.8
|
44.7
|
1.0
|
CD
|
B:GLU582
|
4.9
|
48.3
|
1.0
|
|
Reference:
R.M.Rzasa,
M.J.Frohn,
K.L.Andrews,
S.Chmait,
N.Chen,
J.G.Clarine,
C.Davis,
H.A.Eastwood,
D.B.Horne,
E.Hu,
A.D.Jones,
M.R.Kaller,
R.K.Kunz,
S.Miller,
H.Monenschein,
T.Nguyen,
A.J.Pickrell,
A.Porter,
A.Reichelt,
X.Zhao,
J.J.Treanor,
J.R.Allen.
Synthesis and Preliminary Biological Evaluation of Potent and Selective 2-(3-Alkoxy-1-Azetidinyl) Quinolines As Novel PDE10A Inhibitors with Improved Solubility. Bioorg.Med.Chem. V. 22 6570 2014.
ISSN: ESSN 1464-3391
PubMed: 25456383
DOI: 10.1016/J.BMC.2014.10.013
Page generated: Sun Oct 27 08:34:45 2024
|