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Zinc in PDB 4qn1: Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh

Protein crystallography data

The structure of Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh, PDB code: 4qn1 was solved by A.Dong, Q.Zhang, Y.Li, J.R.Walker, X.Guan, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Y.Tong, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.77 / 2.48
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 130.624, 130.624, 129.571, 90.00, 90.00, 120.00
R / Rfree (%) 22.6 / 25.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh (pdb code 4qn1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh, PDB code: 4qn1:

Zinc binding site 1 out of 1 in 4qn1

Go back to Zinc Binding Sites List in 4qn1
Zinc binding site 1 out of 1 in the Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1501

b:41.7
occ:1.00
ND1 A:HIS1230 2.1 45.2 1.0
SG A:CYS1229 2.4 48.0 1.0
SG A:CYS1244 2.4 42.1 1.0
SG A:CYS1241 2.4 43.8 1.0
CE1 A:HIS1230 2.9 43.9 1.0
CG A:HIS1230 3.2 44.0 1.0
CB A:CYS1241 3.4 41.5 1.0
CB A:CYS1229 3.4 45.3 1.0
CB A:CYS1244 3.4 38.2 1.0
CB A:HIS1230 3.6 42.3 1.0
N A:CYS1241 4.0 44.2 1.0
N A:HIS1230 4.1 44.5 1.0
NE2 A:HIS1230 4.1 43.8 1.0
N A:CYS1244 4.1 36.4 1.0
CA A:CYS1241 4.2 42.0 1.0
CD2 A:HIS1230 4.3 44.7 1.0
C A:CYS1229 4.3 50.3 1.0
CA A:CYS1244 4.4 37.0 1.0
CA A:CYS1229 4.5 46.5 1.0
CA A:HIS1230 4.6 43.4 1.0
O A:HOH1670 4.6 39.8 1.0
O A:ALA1226 4.6 46.2 1.0
CA A:ASN1239 4.6 54.8 1.0
N A:CYS1240 4.7 53.0 1.0
C A:CYS1241 4.8 43.7 1.0
O A:CYS1241 4.8 42.9 1.0
CA A:ALA1226 4.8 42.2 1.0
O A:CYS1229 4.8 51.3 1.0
N A:ASN1239 4.9 56.4 1.0

Reference:

Q.Zhang, A.Dong, Y.Li, J.R.Walker, X.Guan, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Y.Tong. Crystal Structure of A Function Uncharacterized Domain of E3 Ubiquitin Ligase Shprh To Be Published.
Page generated: Sun Oct 27 06:39:55 2024

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