Zinc in PDB 4qhg: Crystal Structure of Methanocaldococcus Jannaschii Dimeric Selecase

Protein crystallography data

The structure of Crystal Structure of Methanocaldococcus Jannaschii Dimeric Selecase, PDB code: 4qhg was solved by M.Lopez-Pelegrin, N.Cerda-Costa, A.Cintas-Pedrola, F.Herranz-Trillo, P.Bernado, J.R.Peinado, J.L.Arolas, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.20 / 2.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 43.530, 43.530, 128.130, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 24.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Methanocaldococcus Jannaschii Dimeric Selecase (pdb code 4qhg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Methanocaldococcus Jannaschii Dimeric Selecase, PDB code: 4qhg:

Zinc binding site 1 out of 1 in 4qhg

Go back to Zinc Binding Sites List in 4qhg
Zinc binding site 1 out of 1 in the Crystal Structure of Methanocaldococcus Jannaschii Dimeric Selecase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Methanocaldococcus Jannaschii Dimeric Selecase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:53.5
occ:1.00
OE2 A:GLU70 2.0 41.4 1.0
O A:HOH332 2.0 42.7 1.0
NE2 A:HIS73 2.2 32.6 1.0
ND1 A:HIS69 2.3 30.9 1.0
CE1 A:HIS69 2.7 30.6 1.0
CD A:GLU70 2.9 43.4 1.0
CD2 A:HIS73 3.1 32.8 1.0
OE1 A:GLU70 3.1 28.2 1.0
CE1 A:HIS73 3.2 32.9 1.0
O A:HOH330 3.4 40.9 1.0
CG A:HIS69 3.7 29.5 1.0
O A:HIS69 3.7 31.6 1.0
NE2 A:HIS69 4.0 31.1 1.0
C A:HIS69 4.1 31.7 1.0
O A:HOH303 4.2 53.9 1.0
CG A:HIS73 4.2 32.3 1.0
CG A:GLU70 4.2 34.7 1.0
CA A:GLU70 4.3 28.8 1.0
ND1 A:HIS73 4.3 34.5 1.0
N A:GLU70 4.4 29.0 1.0
CB A:HIS69 4.4 27.1 1.0
CD2 A:HIS69 4.5 30.9 1.0
CB A:GLU70 4.9 29.7 1.0
CA A:HIS69 4.9 27.5 1.0

Reference:

M.Lopez-Pelegrin, N.Cerda-Costa, A.Cintas-Pedrola, F.Herranz-Trillo, P.Bernado, J.R.Peinado, J.L.Arolas, F.X.Gomis-Ruth. Multiple Stable Conformations Account For Reversible Concentration-Dependent Oligomerization and Autoinhibition of A Metamorphic Metallopeptidase Angew.Chem.Int.Ed.Engl. V. 53 10624 2014.
ISSN: ISSN 1433-7851
PubMed: 25159620
DOI: 10.1002/ANIE.201405727
Page generated: Wed Dec 16 05:43:27 2020

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