Zinc in PDB 4qfj: The Crystal Structure of Rat Angiogenin-Heparin Complex

The structure of The Crystal Structure of Rat Angiogenin-Heparin Complex, PDB code: 4qfj was solved by K.J.Yeo, E.Hwang, K.M.Min, K.Y.Hwang, Y.H.Jeon, S.I.Chang, H.K.Cheong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.19 / 2.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.415, 42.420, 154.312, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 26.6

The binding sites of Zinc atom in the The Crystal Structure of Rat Angiogenin-Heparin Complex (pdb code 4qfj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of Rat Angiogenin-Heparin Complex, PDB code: 4qfj:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the The Crystal Structure of Rat Angiogenin-Heparin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Rat Angiogenin-Heparin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:30.7 occ:1.00 OXT A:ACY204 1.6 22.3 1.0 ND1 A:HIS82 2.2 28.4 1.0 OE2 A:GLU41 2.2 21.6 1.0 OE1 A:GLU41 2.6 22.4 1.0 C A:ACY204 2.7 28.3 1.0 CD A:GLU41 2.8 22.2 1.0 CG A:HIS82 3.0 26.2 1.0 CE1 A:HIS82 3.2 30.9 1.0 O A:ACY204 3.3 35.1 1.0 CB A:HIS82 3.3 23.4 1.0 CH3 A:ACY204 3.9 31.1 1.0 O A:HOH329 4.0 25.4 1.0 O A:HIS82 4.0 27.8 1.0 C A:HIS82 4.1 27.8 1.0 CD2 A:HIS82 4.2 28.4 1.0 O A:GLY85 4.2 38.9 1.0 NE2 A:HIS82 4.2 32.9 1.0 CG A:GLU41 4.3 20.9 1.0 CA A:HIS82 4.3 25.4 1.0 N A:THR83 4.7 29.8 1.0

Zinc binding site 2 out of 2 in the The Crystal Structure of Rat Angiogenin-Heparin Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of Rat Angiogenin-Heparin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:27.6 occ:1.00 OE1 B:GLU41 2.3 26.1 1.0 OXT B:ACY203 2.3 31.9 1.0 ND1 B:HIS82 2.4 31.5 1.0 OE2 B:GLU41 2.6 25.9 1.0 CD B:GLU41 2.7 26.3 1.0 C B:ACY203 3.2 39.1 1.0 CG B:HIS82 3.2 31.6 1.0 CB B:HIS82 3.3 28.1 1.0 CE1 B:HIS82 3.4 29.7 1.0 O B:GLY84 3.7 30.4 1.0 O B:ACY203 3.8 45.6 1.0 O B:HIS82 4.0 30.6 1.0 C B:HIS82 4.1 31.6 1.0 O B:HOH311 4.2 29.6 1.0 CH3 B:ACY203 4.2 36.6 1.0 CG B:GLU41 4.3 28.8 1.0 CA B:HIS82 4.3 28.8 1.0 CD2 B:HIS82 4.4 31.9 1.0 NE2 B:HIS82 4.5 31.2 1.0 N B:THR83 4.5 31.6 1.0 C B:THR83 4.6 31.9 1.0 O B:THR83 4.7 35.3 1.0 CA B:THR83 4.8 34.6 1.0 C B:GLY84 4.8 33.7 1.0 N B:GLY84 5.0 36.6 1.0

K.J.Yeo, E.Hwang, K.M.Min, K.Y.Hwang, Y.H.Jeon, S.I.Chang, H.K.Cheong. The Crystal Structure of Rat Angiogenin-Heparin Complex To Be Published.