Zinc in PDB 4pd2: Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna

All present enzymatic activity of Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna:
3.2.2.23;

The structure of Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna, PDB code: 4pd2 was solved by F.Coste, B.Castaing, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.73 / 1.65
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	91.456, 91.456, 140.389, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 17.9

The binding sites of Zinc atom in the Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna (pdb code 4pd2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna, PDB code: 4pd2:

Zinc binding site 1 out of 1 in the Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Complex Between A C248GH Llfpg Mutant and A Thf Containing Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:24.4 occ:1.00 NE2 A:HIS249 2.1 22.7 1.0 SG A:CYS266 2.3 23.3 1.0 SG A:CYS245 2.3 25.4 1.0 SG A:CYS269 2.3 26.3 1.0 CE1 A:HIS249 2.9 32.3 1.0 CB A:CYS245 3.1 29.7 1.0 CD2 A:HIS249 3.2 28.9 1.0 CB A:CYS266 3.2 21.3 1.0 CB A:CYS269 3.5 25.5 1.0 N A:CYS269 3.7 22.2 1.0 ND1 A:HIS249 4.1 31.8 1.0 CA A:CYS269 4.1 22.9 1.0 NE1 A:TRP179 4.2 23.3 1.0 CG A:HIS249 4.2 29.0 1.0 CB A:VAL268 4.5 24.4 1.0 CB A:ARG247 4.5 27.9 1.0 CD A:ARG247 4.6 28.9 1.0 CA A:CYS245 4.6 26.7 1.0 CA A:CYS266 4.6 20.6 1.0 C A:VAL268 4.7 24.9 1.0 CA A:VAL268 5.0 22.2 1.0 CG1 A:VAL268 5.0 25.1 1.0 CD1 A:TRP179 5.0 20.8 1.0 N A:VAL268 5.0 22.4 1.0

A.Biela, F.Coste, F.Culard, M.Guerin, S.Goffinont, K.Gasteiger, J.Ciesla, A.Winczura, Z.Kazimierczuk, D.Gasparutto, T.Carell, B.Tudek, B.Castaing. Zinc Finger Oxidation of Fpg/Nei Dna Glycosylases By 2-Thioxanthine: Biochemical and X-Ray Structural Characterization. Nucleic Acids Res. V. 42 10748 2014.
ISSN: ESSN 1362-4962
PubMed: 25143530
DOI: 10.1093/NAR/GKU613