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Zinc in PDB 4nt5: Crystal Structure of Human Von Willebrand Factor Ctck Domain

Protein crystallography data

The structure of Crystal Structure of Human Von Willebrand Factor Ctck Domain, PDB code: 4nt5 was solved by Y.F.Zhou, T.A.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.85 / 3.28
Space group P 43 3 2
Cell size a, b, c (Å), α, β, γ (°) 135.340, 135.340, 135.340, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 24.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Human Von Willebrand Factor Ctck Domain (pdb code 4nt5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Human Von Willebrand Factor Ctck Domain, PDB code: 4nt5:

Zinc binding site 1 out of 1 in 4nt5

Go back to Zinc Binding Sites List in 4nt5
Zinc binding site 1 out of 1 in the Crystal Structure of Human Von Willebrand Factor Ctck Domain


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Human Von Willebrand Factor Ctck Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn3002

b:89.3
occ:0.50
OD2 A:ASP2746 2.1 0.3 1.0
NE2 A:HIS2748 2.1 84.8 1.0
CG A:ASP2746 2.7 96.5 1.0
CE1 A:HIS2748 2.8 83.9 1.0
OD1 A:ASP2746 2.9 80.8 1.0
CD2 A:HIS2748 3.3 86.3 1.0
ND1 A:HIS2748 4.0 85.4 1.0
CB A:ASP2746 4.0 91.4 1.0
CG A:HIS2748 4.3 86.1 1.0
CB A:ALA2729 5.0 90.0 1.0

Reference:

Y.F.Zhou, T.A.Springer. Highly Reinforced Structure of A C-Terminal Dimerization Domain in Von Willebrand Factor. Blood V. 123 1785 2014.
ISSN: ISSN 0006-4971
PubMed: 24394662
DOI: 10.1182/BLOOD-2013-11-523639
Page generated: Sun Oct 27 03:20:15 2024

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