Zinc in PDB 4kfv: Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55

The structure of Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55, PDB code: 4kfv was solved by X.Liu, J.Hu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.06 / 2.20
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	44.989, 104.287, 37.932, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 28.3

The structure of Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55 also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55 (pdb code 4kfv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55, PDB code: 4kfv:

Zinc binding site 1 out of 1 in the Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:29.2 occ:1.00 NE2 A:HIS19 2.3 31.9 1.0 ND1 A:HIS17 2.3 22.1 1.0 CL A:CL302 2.4 26.8 1.0 SG A:CYS102 2.5 29.3 1.0 CD2 A:HIS19 3.1 30.1 1.0 CB A:CYS102 3.3 27.2 1.0 CG A:HIS17 3.3 21.0 1.0 CE1 A:HIS17 3.4 21.1 1.0 CE1 A:HIS19 3.4 33.6 1.0 CB A:HIS17 3.4 19.7 1.0 CG A:HIS19 4.4 32.0 1.0 CD2 A:HIS17 4.4 18.6 1.0 NE2 A:HIS17 4.4 23.0 1.0 ND1 A:HIS19 4.5 34.9 1.0 CD A:ARG100 4.5 38.7 1.0 CB A:ARG100 4.5 31.3 1.0 CA A:CYS102 4.7 29.3 1.0 CB A:ALA107 4.7 30.1 1.0 O A:ARG100 4.8 25.1 1.0 NH1 A:ARG100 4.8 40.7 1.0 CA A:HIS17 4.9 18.7 1.0 CG A:ARG100 4.9 33.1 1.0

Y.Feng, W.Yu, X.Li, S.Lin, Y.Zhou, J.Hu, X.Liu. Structural Insight Into Golgi Membrane Stacking By GRASP65 and GRASP55 Proteins J.Biol.Chem. V. 288 28418 2013.
ISSN: ISSN 0021-9258
PubMed: 23940043
DOI: 10.1074/JBC.M113.478024