Atomistry » Zinc » PDB 4k99-4kjg » 4kay
Atomistry »
  Zinc »
    PDB 4k99-4kjg »
      4kay »

Zinc in PDB 4kay: Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn

Enzymatic activity of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn

All present enzymatic activity of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn:
3.1.3.27;

Protein crystallography data

The structure of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn, PDB code: 4kay was solved by A.Vrielink, C.Wanty, A.Anandan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.80 / 1.78
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 85.068, 90.517, 91.176, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 19

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn (pdb code 4kay). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn, PDB code: 4kay:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 4kay

Go back to Zinc Binding Sites List in 4kay
Zinc binding site 1 out of 6 in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:11.1
occ:1.00
 OE2 A:GLU240 1.8 6.6 1.0
OD2 A:ASP452 2.0 12.1 1.0
OG1 A:TPO280 2.0 11.3 1.0
NE2 A:HIS453 2.0 10.0 1.0
CD A:GLU240 2.4 13.9 1.0
OE1 A:GLU240 2.4 13.0 1.0
CG A:ASP452 2.9 13.7 1.0
O2P A:TPO280 2.9 32.7 1.0
CD2 A:HIS453 2.9 9.3 1.0
CE1 A:HIS453 3.0 7.5 1.0
HD2 A:HIS453 3.0 11.1 1.0
P A:TPO280 3.0 48.7 1.0
OD1 A:ASP452 3.1 9.4 1.0
CB A:TPO280 3.2 13.8 1.0
HG22 A:TPO280 3.2 16.8 1.0
HE1 A:HIS453 3.2 9.0 1.0
HA A:TPO280 3.4 12.3 1.0
H A:TPO280 3.4 14.6 1.0
CA A:TPO280 3.6 10.2 1.0
CG2 A:TPO280 3.6 14.0 1.0
N A:TPO280 3.6 12.2 1.0
O3P A:TPO280 3.8 24.4 1.0
HG21 A:TPO280 3.9 16.8 1.0
HD2 A:HIS383 3.9 30.3 1.0
CG A:GLU240 3.9 7.2 1.0
CG A:HIS453 4.0 8.7 1.0
ND1 A:HIS453 4.0 9.5 1.0
HA A:GLU240 4.0 9.5 1.0
HG1 A:THR241 4.0 13.0 1.0
HB A:TPO280 4.0 16.5 1.0
H A:THR241 4.1 10.9 1.0
O A:HOH712 4.2 8.4 1.0
HG3 A:GLU240 4.2 8.6 1.0
CB A:ASP452 4.2 8.8 1.0
HB2 A:ASP452 4.3 10.5 1.0
O1P A:TPO280 4.3 47.1 1.0
OG1 A:THR241 4.3 10.8 1.0
ZN A:ZN602 4.3 21.6 0.7
HA A:SER279 4.4 14.6 1.0
HG2 A:GLU240 4.4 8.6 1.0
NE2 A:HIS465 4.5 16.2 1.0
C A:SER279 4.5 13.3 1.0
N A:THR241 4.5 9.1 1.0
HB3 A:ASP452 4.6 10.5 1.0
HG23 A:TPO280 4.6 16.8 1.0
CD2 A:HIS383 4.6 25.3 1.0
CA A:GLU240 4.7 7.9 1.0
CB A:GLU240 4.7 7.9 1.0
HB2 A:GLU240 4.7 9.5 1.0
HD1 A:HIS453 4.7 11.4 1.0
CE1 A:HIS465 4.9 17.9 1.0
HA A:THR241 4.9 9.3 1.0
OD2 A:ASP324 5.0 12.3 1.0
NE2 A:HIS383 5.0 20.2 1.0
CD2 A:HIS465 5.0 10.9 1.0
C A:GLU240 5.0 11.5 1.0

Zinc binding site 2 out of 6 in 4kay

Go back to Zinc Binding Sites List in 4kay
Zinc binding site 2 out of 6 in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn602

b:21.6
occ:0.70
 O2P A:TPO280 2.0 32.7 1.0
NE2 A:HIS383 2.2 20.2 1.0
NE2 A:HIS465 2.3 16.2 1.0
O3P A:TPO280 2.5 24.4 1.0
HE1 A:HIS465 2.6 21.5 1.0
P A:TPO280 2.7 48.7 1.0
CE1 A:HIS465 2.8 17.9 1.0
CE1 A:HIS383 3.0 23.6 1.0
HE1 A:HIS383 3.1 28.3 1.0
CD2 A:HIS383 3.2 25.3 1.0
O1P A:TPO280 3.4 47.1 1.0
HD2 A:HIS383 3.5 30.3 1.0
CD2 A:HIS465 3.6 10.9 1.0
OG1 A:TPO280 4.0 11.3 1.0
HD2 A:HIS465 4.0 13.1 1.0
ND1 A:HIS465 4.1 13.8 1.0
ND1 A:HIS383 4.2 21.2 1.0
HE1 A:HIS453 4.2 9.0 1.0
CG A:HIS383 4.3 15.1 1.0
ZN A:ZN601 4.3 11.1 1.0
N B:ASN211 4.4 34.3 0.8
H A:TPO280 4.5 14.6 1.0
CG A:HIS465 4.5 11.9 1.0
OE2 A:GLU240 4.5 6.6 1.0
NE2 A:HIS453 4.6 10.0 1.0
HG1 A:THR241 4.7 13.0 1.0
OD1 B:ASN211 4.7 17.9 0.8
CE1 A:HIS453 4.7 7.5 1.0
HD1 A:HIS465 4.7 16.6 1.0
HA B:ASN211 4.8 38.9 0.8
HD1 A:HIS383 4.9 25.4 1.0
O A:HOH817 5.0 16.8 1.0

Zinc binding site 3 out of 6 in 4kay

Go back to Zinc Binding Sites List in 4kay
Zinc binding site 3 out of 6 in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn603

b:51.4
occ:1.00
 NE2 A:HIS303 2.2 19.8 1.0
CE1 A:HIS303 3.0 18.8 1.0
HE1 A:HIS303 3.0 22.6 1.0
HG23 A:ILE212 3.2 51.2 1.0
CD2 A:HIS303 3.3 27.9 1.0
H A:ILE212 3.5 44.1 0.8
HD2 A:HIS303 3.5 33.5 1.0
N A:ASN211 3.9 26.9 0.8
CG2 A:ILE212 4.1 42.7 1.0
ND1 A:HIS303 4.2 15.4 1.0
HG22 A:ILE212 4.3 51.2 1.0
CG A:HIS303 4.3 17.9 1.0
N A:ILE212 4.4 36.8 1.0
O A:ILE212 4.4 28.1 1.0
HG21 A:ILE212 4.5 51.2 1.0
O A:HOH985 4.6 28.9 1.0
HD13 A:ILE212 4.8 39.9 1.0
HG12 A:ILE212 4.9 46.6 1.0
HD1 A:HIS303 4.9 18.4 1.0

Zinc binding site 4 out of 6 in 4kay

Go back to Zinc Binding Sites List in 4kay
Zinc binding site 4 out of 6 in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn601

b:10.8
occ:1.00
 OE2 B:GLU240 1.8 5.8 1.0
OG1 B:TPO280 2.0 10.3 1.0
OD2 B:ASP452 2.0 12.8 1.0
NE2 B:HIS453 2.0 9.2 1.0
OE1 B:GLU240 2.3 11.0 1.0
CD B:GLU240 2.3 11.7 1.0
O2P B:TPO280 2.8 34.3 1.0
CG B:ASP452 2.9 11.2 1.0
CD2 B:HIS453 2.9 8.5 1.0
CE1 B:HIS453 3.0 8.9 1.0
P B:TPO280 3.0 54.3 1.0
HD2 B:HIS453 3.1 10.2 1.0
OD1 B:ASP452 3.1 8.8 1.0
CB B:TPO280 3.2 11.9 1.0
HG22 B:TPO280 3.2 14.2 1.0
HE1 B:HIS453 3.2 10.7 1.0
H B:TPO280 3.3 14.9 1.0
HA B:TPO280 3.3 10.9 1.0
CA B:TPO280 3.6 9.1 1.0
N B:TPO280 3.6 12.4 1.0
CG2 B:TPO280 3.6 11.9 1.0
O3P B:TPO280 3.8 25.0 1.0
CG B:GLU240 3.8 8.7 1.0
HG21 B:TPO280 3.9 14.2 1.0
HD2 B:HIS383 3.9 25.5 1.0
ND1 B:HIS453 4.0 9.4 1.0
CG B:HIS453 4.0 9.8 1.0
HG1 B:THR241 4.0 13.4 1.0
HA B:GLU240 4.0 10.5 1.0
HB B:TPO280 4.0 14.2 1.0
H B:THR241 4.1 10.1 1.0
HG3 B:GLU240 4.1 10.4 1.0
HE2 B:HIS465 4.2 19.9 1.0
O1P B:TPO280 4.2 50.3 1.0
CB B:ASP452 4.2 9.5 1.0
OG1 B:THR241 4.2 11.2 1.0
O B:HOH725 4.2 10.8 1.0
HG2 B:GLU240 4.3 10.4 1.0
HB2 B:ASP452 4.3 11.4 1.0
ZN B:ZN602 4.4 23.7 0.7
HA B:SER279 4.4 18.7 1.0
C B:SER279 4.5 17.0 1.0
NE2 B:HIS465 4.5 16.6 1.0
N B:THR241 4.5 8.4 1.0
HG23 B:TPO280 4.6 14.2 1.0
HB3 B:ASP452 4.6 11.4 1.0
CB B:GLU240 4.6 8.5 1.0
HB2 B:GLU240 4.6 10.2 1.0
CD2 B:HIS383 4.7 21.2 1.0
CA B:GLU240 4.7 8.7 1.0
HD1 B:HIS453 4.7 11.3 1.0
CE1 B:HIS465 4.9 14.0 1.0
NE2 B:HIS383 5.0 18.9 1.0
HA B:THR241 5.0 8.6 1.0
CD2 B:HIS465 5.0 12.2 1.0
C B:GLU240 5.0 9.7 1.0

Zinc binding site 5 out of 6 in 4kay

Go back to Zinc Binding Sites List in 4kay
Zinc binding site 5 out of 6 in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn602

b:23.7
occ:0.68
 HE2 B:HIS465 1.7 19.9 1.0
O2P B:TPO280 2.0 34.3 1.0
NE2 B:HIS383 2.2 18.9 1.0
NE2 B:HIS465 2.5 16.6 1.0
O3P B:TPO280 2.5 25.0 1.0
P B:TPO280 2.6 54.3 1.0
HE1 B:HIS465 2.8 16.8 1.0
CE1 B:HIS465 3.0 14.0 1.0
CE1 B:HIS383 3.0 22.7 1.0
HE1 B:HIS383 3.1 27.2 1.0
O1P B:TPO280 3.2 50.3 1.0
CD2 B:HIS383 3.3 21.2 1.0
HD2 B:HIS383 3.5 25.5 1.0
CD2 B:HIS465 3.7 12.2 1.0
OG1 B:TPO280 4.0 10.3 1.0
O A:HOH1255 4.1 21.8 1.0
HD2 B:HIS465 4.1 14.7 1.0
ND1 B:HIS383 4.2 18.3 1.0
ND1 B:HIS465 4.2 12.5 1.0
CG B:HIS383 4.3 12.2 1.0
ZN B:ZN601 4.4 10.8 1.0
HE1 B:HIS453 4.4 10.7 1.0
N A:ASN211 4.4 26.9 0.8
H B:TPO280 4.5 14.9 1.0
OE2 B:GLU240 4.5 5.8 1.0
CG B:HIS465 4.6 10.3 1.0
NE2 B:HIS453 4.7 9.2 1.0
OD1 A:ASN211 4.8 18.0 0.8
HA A:ASN211 4.8 36.8 0.8
HG1 B:THR241 4.8 13.4 1.0
CE1 B:HIS453 4.8 8.9 1.0
HD1 B:HIS465 4.9 15.0 1.0
HD1 B:HIS383 4.9 21.9 1.0
O B:HOH800 5.0 17.6 1.0

Zinc binding site 6 out of 6 in 4kay

Go back to Zinc Binding Sites List in 4kay
Zinc binding site 6 out of 6 in the Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of the Soluble Domain of Lipooligosaccharide Phosphoethanolamine Transferase A From Neisseria Meningitidis - Complex with Zn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn603

b:51.6
occ:1.00
 NE2 B:HIS303 2.2 19.1 1.0
CE1 B:HIS303 3.0 19.2 1.0
HE1 B:HIS303 3.0 23.1 1.0
HG23 B:ILE212 3.2 51.0 1.0
CD2 B:HIS303 3.3 30.5 1.0
H B:ILE212 3.5 44.3 0.8
HD2 B:HIS303 3.6 36.6 1.0
N B:ASN211 3.9 34.3 0.8
CG2 B:ILE212 4.1 42.5 1.0
ND1 B:HIS303 4.2 13.3 1.0
HG22 B:ILE212 4.3 51.0 1.0
CG B:HIS303 4.4 18.1 1.0
N B:ILE212 4.4 37.0 1.0
HG21 B:ILE212 4.5 51.0 1.0
O B:ILE212 4.5 30.9 1.0
HD13 B:ILE212 4.7 37.1 1.0
O B:HOH976 4.8 26.9 1.0
HG12 B:ILE212 4.9 46.4 1.0
HD1 B:HIS303 4.9 16.0 1.0

Reference:

C.Wanty, A.Anandan, S.Piek, J.Walshe, J.Ganguly, R.W.Carlson, K.A.Stubbs, C.M.Kahler, A.Vrielink. The Structure of the Neisserial Lipooligosaccharide Phosphoethanolamine Transferase A (Lpta) Required For Resistance to Polymyxin. J.Mol.Biol. V. 425 3389 2013.
ISSN: ISSN 0022-2836
PubMed: 23810904
DOI: 10.1016/J.JMB.2013.06.029
Page generated: Wed Dec 16 05:28:46 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy