Zinc in PDB 4k7t: Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate

The structure of Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate, PDB code: 4k7t was solved by N.J.Economou, P.J.Loll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	12.01 / 1.10
Space group	P 62
Cell size a, b, c (Å), α, β, γ (°)	35.980, 35.980, 16.120, 90.00, 90.00, 120.00
R / Rfree (%)	12.7 / 14.9

The structure of Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Zinc atom in the Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate (pdb code 4k7t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate, PDB code: 4k7t:

Zinc binding site 1 out of 1 in the Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Ternary Complex of Bacitracin, Zinc, and Geranyl- Pyrophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:6.9 occ:1.00 H2 A:ILE1 1.9 10.5 1.0 O1B A:GPP101 2.0 5.9 1.0 O1A A:GPP101 2.1 6.5 1.0 OE1 A:DGL4 2.1 6.9 1.0 O A:HOH201 2.1 7.9 1.0 N A:ILE1 2.1 8.8 1.0 N A:CYS2 2.2 9.6 1.0 H A:ILE1 2.9 10.5 1.0 C A:ILE1 2.9 10.7 1.0 H A:LEU3 3.0 11.8 1.0 CA A:ILE1 3.0 10.7 1.0 CD A:DGL4 3.1 7.5 1.0 PA A:GPP101 3.2 7.0 1.0 PB A:GPP101 3.2 6.3 1.0 O3A A:GPP101 3.3 6.1 1.0 CA A:CYS2 3.3 10.7 1.0 HA A:CYS2 3.4 12.9 1.0 OE2 A:DGL4 3.4 8.1 1.0 H A:DGL4 3.5 9.6 1.0 HA A:ILE1 3.5 12.8 1.0 HD22 A:ASN12 3.5 8.6 1.0 N A:LEU3 3.6 9.8 1.0 HB2 A:ASN12 3.7 7.7 1.0 O A:HOH205 3.9 14.2 1.0 C A:CYS2 4.0 11.2 1.0 O2A A:GPP101 4.0 7.1 1.0 O A:HOH206 4.0 12.3 1.0 HG12 A:ILE1 4.1 19.1 1.0 O3B A:GPP101 4.1 6.5 1.0 ND2 A:ASN12 4.1 7.1 1.0 HB3 A:DGL4 4.3 9.5 1.0 HG13 A:ILE1 4.3 19.1 1.0 O2B A:GPP101 4.3 5.8 1.0 CB A:ILE1 4.3 13.9 1.0 N A:DGL4 4.4 8.0 1.0 O1 A:GPP101 4.4 8.4 1.0 CG A:DGL4 4.4 8.2 1.0 CG1 A:ILE1 4.4 15.9 1.0 CB A:ASN12 4.5 6.4 1.0 SG A:CYS2 4.5 12.7 1.0 CB A:CYS2 4.6 12.0 1.0 HD21 A:ASN12 4.6 8.6 1.0 HB3 A:ASN12 4.7 7.7 1.0 CG A:ASN12 4.7 6.9 1.0 HB2 A:LEU3 4.8 13.2 1.0 HG23 A:ILE1 4.8 17.4 1.0 CB A:DGL4 4.8 7.9 1.0 CA A:LEU3 4.8 9.6 1.0 HG2 A:DGL4 4.9 9.8 1.0 HB A:ILE1 5.0 16.6 1.0

N.J.Economou, S.Cocklin, P.J.Loll. High-Resolution Crystal Structure Reveals Molecular Details of Target Recognition By Bacitracin. Proc.Natl.Acad.Sci.Usa V. 110 14207 2013.
ISSN: ISSN 0027-8424
PubMed: 23940351
DOI: 10.1073/PNAS.1308268110