Zinc in PDB 4gop: Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna

The structure of Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna, PDB code: 4gop was solved by N.P.Pavletich, F.Jie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	184.100, 93.800, 120.500, 90.00, 110.90, 90.00
R / Rfree (%)	24.2 / 28.6

The binding sites of Zinc atom in the Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna (pdb code 4gop). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna, PDB code: 4gop:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn701 b:0.9 occ:1.00 SG C:CYS495 2.3 0.9 1.0 SG C:CYS512 2.3 0.8 1.0 SG C:CYS509 2.3 0.4 1.0 SG C:CYS490 2.3 0.3 1.0 N C:CYS512 3.1 0.3 1.0 CB C:CYS495 3.2 0.6 1.0 CB C:LYS511 3.3 0.8 1.0 CB C:CYS490 3.3 1.0 1.0 CB C:CYS509 3.3 0.4 1.0 CB C:CYS512 3.3 0.1 1.0 CD C:LYS511 3.4 0.3 1.0 OG C:SER492 3.8 0.3 1.0 CA C:CYS512 3.8 0.2 1.0 CG C:LYS511 3.9 0.7 1.0 C C:LYS511 4.1 0.5 1.0 CB C:SER492 4.1 0.2 1.0 CA C:LYS511 4.1 0.4 1.0 CB C:LYS497 4.3 0.3 1.0 N C:LYS511 4.4 0.4 1.0 CE C:LYS511 4.4 0.8 1.0 CA C:CYS495 4.6 0.6 1.0 NZ C:LYS511 4.7 0.9 1.0 CA C:CYS509 4.7 1.0 1.0 CA C:CYS490 4.8 0.0 1.0 C C:CYS495 4.8 0.5 1.0 C C:CYS512 4.9 0.7 1.0

Zinc binding site 2 out of 2 in the Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna within 5.0Å range: probe atom residue distance (Å) B Occ Z:Zn701 b:0.9 occ:1.00 SG Z:CYS509 2.3 0.4 1.0 SG Z:CYS512 2.3 0.8 1.0 SG Z:CYS490 2.3 0.0 1.0 SG Z:CYS495 2.4 0.8 1.0 N Z:CYS512 2.7 0.5 1.0 CB Z:LYS511 3.1 0.3 1.0 CB Z:CYS509 3.3 0.1 1.0 CB Z:CYS512 3.3 0.7 1.0 CB Z:CYS490 3.3 0.6 1.0 CA Z:CYS512 3.4 0.0 1.0 CB Z:CYS495 3.6 0.3 1.0 C Z:LYS511 3.7 0.3 1.0 CD Z:LYS511 3.7 0.9 1.0 CG Z:LYS511 3.7 0.6 1.0 O Z:CYS512 3.8 0.6 1.0 CA Z:LYS511 3.8 0.1 1.0 C Z:CYS512 3.9 0.0 1.0 CB Z:LYS497 4.0 0.5 1.0 N Z:LYS511 4.1 0.1 1.0 CA Z:CYS509 4.6 0.8 1.0 C Z:CYS509 4.8 0.3 1.0 CA Z:CYS490 4.8 0.8 1.0 O Z:LYS511 4.8 0.4 1.0 N Z:LYS497 4.9 0.8 1.0 CE Z:LYS511 4.9 0.6 1.0 CG Z:LYS497 4.9 0.7 1.0 O Z:CYS509 4.9 0.0 1.0 CA Z:CYS495 4.9 0.5 1.0 N Z:ASP513 5.0 0.4 1.0

J.Fan, N.P.Pavletich. Structure and Conformational Change of A Replication Protein A Heterotrimer Bound to Ssdna. Genes Dev. V. 26 2337 2012.
ISSN: ISSN 0890-9369
PubMed: 23070815
DOI: 10.1101/GAD.194787.112