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Zinc in PDB 4ggk: Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate

Protein crystallography data

The structure of Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate, PDB code: 4ggk was solved by J.J.Ipsaro, A.D.Haase, G.J.Hannon, L.Joshua-Tor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.27 / 2.10
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 38.859, 38.859, 213.310, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 25.1

Other elements in 4ggk:

The structure of Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate also contains other interesting chemical elements:

Tungsten (W) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate (pdb code 4ggk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate, PDB code: 4ggk:

Zinc binding site 1 out of 1 in 4ggk

Go back to Zinc Binding Sites List in 4ggk
Zinc binding site 1 out of 1 in the Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zucchini From Mouse (Mzuc / PLD6 / Mitopld) Bound to Tungstate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:64.1
occ:1.00
NE2 A:HIS72 2.1 61.2 1.0
SG A:CYS49 2.3 51.8 1.0
SG A:CYS66 2.3 70.1 1.0
SG A:CYS68 2.3 62.3 1.0
CE1 A:HIS72 3.0 63.6 1.0
CD2 A:HIS72 3.0 59.2 1.0
CB A:CYS49 3.2 51.0 1.0
CB A:CYS68 3.3 64.6 1.0
CB A:CYS66 3.4 71.8 1.0
ND1 A:HIS72 4.1 63.1 1.0
CG A:HIS72 4.1 60.9 1.0
N A:CYS68 4.1 71.3 1.0
CA A:CYS68 4.1 68.4 1.0
C A:CYS68 4.4 68.0 1.0
O A:CYS68 4.5 69.5 1.0
CA A:CYS66 4.5 76.0 1.0
C A:CYS66 4.6 77.0 1.0
O A:CYS66 4.6 77.0 1.0
CA A:CYS49 4.6 47.7 1.0
CG A:GLU51 4.9 57.8 1.0
O A:LEU70 5.0 59.6 1.0

Reference:

J.J.Ipsaro, A.D.Haase, S.R.Knott, L.Joshua-Tor, G.J.Hannon. The Structural Biochemistry of Zucchini Implicates It As A Nuclease in Pirna Biogenesis. Nature V. 491 279 2012.
ISSN: ISSN 0028-0836
PubMed: 23064227
DOI: 10.1038/NATURE11502
Page generated: Wed Dec 16 05:19:49 2020

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