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Zinc in PDB 4fc8: Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis

Protein crystallography data

The structure of Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis, PDB code: 4fc8 was solved by K.Xiang, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.168, 88.734, 94.803, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 27.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis (pdb code 4fc8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis, PDB code: 4fc8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4fc8

Go back to Zinc Binding Sites List in 4fc8
Zinc binding site 1 out of 2 in the Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:84.9
occ:1.00
ND1 A:HIS115 2.2 68.7 1.0
SG A:CYS78 2.2 69.0 1.0
SG A:CYS73 2.3 63.1 1.0
SG A:CYS111 2.4 77.9 1.0
CB A:CYS73 3.0 65.4 1.0
CB A:CYS78 3.1 67.0 1.0
CE1 A:HIS115 3.2 70.2 1.0
CG A:HIS115 3.3 67.0 1.0
CB A:CYS111 3.4 78.3 1.0
CB A:HIS115 3.6 65.2 1.0
N A:CYS111 4.0 76.4 1.0
NE2 A:HIS115 4.3 69.3 1.0
CA A:CYS111 4.3 78.4 1.0
CD2 A:HIS115 4.4 68.2 1.0
CA A:CYS78 4.5 67.2 1.0
CA A:CYS73 4.5 65.7 1.0
CB A:TYR75 4.8 52.5 1.0
O A:LYS80 5.0 80.5 1.0
O A:SER81 5.0 84.8 1.0

Zinc binding site 2 out of 2 in 4fc8

Go back to Zinc Binding Sites List in 4fc8
Zinc binding site 2 out of 2 in the Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Transcription Regulator Protein RTR1 From Kluyveromyces Lactis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:66.3
occ:1.00
ND1 B:HIS115 2.1 53.8 1.0
SG B:CYS78 2.2 55.5 1.0
SG B:CYS73 2.3 51.5 1.0
SG B:CYS111 2.5 51.6 1.0
CB B:CYS78 3.0 52.4 1.0
CE1 B:HIS115 3.0 55.1 1.0
CB B:CYS73 3.1 51.1 1.0
CG B:HIS115 3.2 50.5 1.0
CB B:CYS111 3.3 52.2 1.0
CB B:HIS115 3.7 45.9 1.0
N B:CYS111 3.9 50.1 1.0
NE2 B:HIS115 4.2 56.1 1.0
CA B:CYS111 4.2 51.2 1.0
CD2 B:HIS115 4.3 53.4 1.0
CA B:CYS78 4.4 54.0 1.0
CA B:CYS73 4.6 51.2 1.0
CB B:LYS80 4.9 59.1 1.0
CB B:TYR75 4.9 45.0 1.0
OG1 B:THR112 4.9 46.7 1.0

Reference:

K.Xiang, J.L.Manley, L.Tong. The Yeast Regulator of Transcription Protein RTR1 Lacks An Active Site and Phosphatase Activity. Nat Commun V. 3 946 2012.
ISSN: ESSN 2041-1723
PubMed: 22781759
DOI: 10.1038/NCOMMS1947
Page generated: Wed Dec 16 05:17:19 2020

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