Atomistry » Zinc » PDB 4f78-4fke » 4f7o
Atomistry »
  Zinc »
    PDB 4f78-4fke »
      4f7o »

Zinc in PDB 4f7o: Crystal Structure of CSN5

Protein crystallography data

The structure of Crystal Structure of CSN5, PDB code: 4f7o was solved by A.Echalier, M.Birol, F.Hoh, C.Dumas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.00 / 2.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 161.734, 46.505, 71.261, 90.00, 100.27, 90.00
R / Rfree (%) 21.6 / 27.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of CSN5 (pdb code 4f7o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of CSN5, PDB code: 4f7o:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 4f7o

Go back to Zinc Binding Sites List in 4f7o
Zinc binding site 1 out of 2 in the Crystal Structure of CSN5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of CSN5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:27.6
occ:1.00
NE2 A:HIS140 2.0 32.8 1.0
NE2 A:HIS138 2.1 11.5 1.0
O A:HOH401 2.1 47.8 1.0
OD2 A:ASP151 2.1 32.3 1.0
OD1 A:ASP151 2.3 32.9 1.0
CG A:ASP151 2.5 30.2 1.0
CE1 A:HIS140 2.8 34.8 1.0
CD2 A:HIS138 3.0 7.6 1.0
CE1 A:HIS138 3.1 16.0 1.0
CD2 A:HIS140 3.2 28.3 1.0
OG A:SER148 3.4 20.5 1.0
ND1 A:HIS140 4.0 27.5 1.0
CB A:ASP151 4.0 35.7 1.0
CB A:SER148 4.1 19.2 1.0
CG A:HIS140 4.2 28.0 1.0
CG A:HIS138 4.2 14.7 1.0
ND1 A:HIS138 4.2 21.8 1.0
NH1 A:ARG106 4.3 52.7 1.0
N A:SER148 4.4 18.0 1.0
O A:TRP146 4.6 15.7 1.0
NH2 A:ARG106 4.7 48.7 1.0
CA A:SER148 4.9 21.4 1.0
CZ A:ARG106 5.0 48.9 1.0
CA A:ASP151 5.0 34.4 1.0

Zinc binding site 2 out of 2 in 4f7o

Go back to Zinc Binding Sites List in 4f7o
Zinc binding site 2 out of 2 in the Crystal Structure of CSN5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of CSN5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:34.8
occ:1.00
OD2 B:ASP151 2.0 40.3 1.0
NE2 B:HIS140 2.0 37.2 1.0
NE2 B:HIS138 2.1 9.6 1.0
O B:HOH401 2.1 18.4 1.0
CG B:ASP151 2.7 36.9 1.0
OD1 B:ASP151 2.8 26.8 1.0
CE1 B:HIS138 2.9 19.8 1.0
CE1 B:HIS140 2.9 34.5 1.0
CD2 B:HIS140 3.1 29.1 1.0
CD2 B:HIS138 3.2 17.9 1.0
OG B:SER148 3.5 25.9 1.0
CB B:SER148 3.9 29.0 1.0
ND1 B:HIS138 4.1 28.0 1.0
ND1 B:HIS140 4.1 31.8 1.0
NH2 B:ARG106 4.2 80.7 1.0
CB B:ASP151 4.2 40.8 1.0
CG B:HIS140 4.2 35.1 1.0
CG B:HIS138 4.3 22.6 1.0
N B:SER148 4.3 30.7 1.0
O B:TRP146 4.6 33.5 1.0
CA B:SER148 4.8 30.6 1.0
NH1 B:ARG106 4.8 65.8 1.0
CZ B:ARG106 5.0 74.2 1.0

Reference:

A.Echalier, Y.Pan, M.Birol, N.Tavernier, L.Pintard, F.Hoh, C.Ebel, N.Galophe, F.X.Claret, C.Dumas. Insights Into the Regulation of the Human COP9 Signalosome Catalytic Subunit, CSN5/JAB1. Proc.Natl.Acad.Sci.Usa V. 110 1273 2013.
ISSN: ISSN 0027-8424
PubMed: 23288897
DOI: 10.1073/PNAS.1209345110
Page generated: Sat Oct 26 22:19:47 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy