Zinc in PDB 4bmj: Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1

The structure of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1, PDB code: 4bmj was solved by M.A.Ceregido, M.Spinola-Amilibia, L.Buts, J.Rivera, J.Bravo, N.A.J.Van Nuland, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	103.14 / 2.75
Space group	P 65 2 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.878, 118.878, 327.345, 90.00, 90.00, 120.00
R / Rfree (%)	21.471 / 25.459

The structure of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 also contains other interesting chemical elements:

Chlorine

(Cl)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Zinc atom in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 (pdb code 4bmj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 22 binding sites of Zinc where determined in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1, PDB code: 4bmj:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:10.0 occ:1.00 NE2 A:HIS29 1.9 6.2 1.0 SG A:CYS13 2.0 20.1 1.0 NE2 A:HIS33 2.2 13.9 1.0 SG A:CYS10 2.2 23.7 1.0 CE1 A:HIS29 2.7 8.5 1.0 CE1 A:HIS33 2.9 14.9 1.0 CD2 A:HIS29 3.0 6.5 1.0 CB A:CYS13 3.1 24.3 1.0 CD2 A:HIS33 3.2 13.0 1.0 CB A:CYS10 3.2 24.8 1.0 N A:CYS13 3.5 23.4 1.0 CA A:CYS13 3.8 25.5 1.0 ND1 A:HIS29 3.9 8.1 1.0 ND1 A:HIS33 4.0 14.3 1.0 CG A:HIS29 4.1 8.1 1.0 CG A:HIS33 4.2 12.4 1.0 C A:LEU12 4.3 22.7 1.0 C A:CYS13 4.5 28.4 1.0 CB A:LEU12 4.6 17.4 1.0 N A:LEU12 4.6 20.9 1.0 CA A:CYS10 4.6 25.0 1.0 CA A:LEU12 4.7 20.6 1.0 CB A:LEU15 4.8 29.2 1.0 O A:CYS13 4.8 28.6 1.0 CD2 A:LEU15 5.0 29.4 1.0

Zinc binding site 2 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:2.1 occ:1.00 NE2 A:HIS60 1.9 10.0 1.0 NE2 A:HIS56 1.9 4.4 1.0 SG A:CYS40 2.0 9.0 1.0 SG A:CYS37 2.2 17.7 1.0 CE1 A:HIS56 2.9 3.5 1.0 CE1 A:HIS60 2.9 12.1 1.0 CD2 A:HIS60 2.9 11.8 1.0 CD2 A:HIS56 3.0 3.8 1.0 CB A:CYS37 3.2 10.7 1.0 CB A:CYS40 3.3 12.3 1.0 N A:CYS40 3.7 12.5 1.0 ND1 A:HIS56 4.0 2.2 1.0 ND1 A:HIS60 4.0 14.7 1.0 CA A:CYS40 4.0 12.8 1.0 CG A:HIS60 4.0 14.0 1.0 CG A:HIS56 4.0 4.9 1.0 CB A:GLU42 4.4 8.0 1.0 N A:SER41 4.5 10.4 1.0 C A:CYS40 4.5 12.1 1.0 CA A:CYS37 4.6 10.4 1.0 CB A:MET39 4.7 14.7 1.0 C A:MET39 4.8 14.6 1.0 N A:GLU42 4.8 9.1 1.0

Zinc binding site 3 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:17.7 occ:1.00 NE2 B:HIS29 1.9 9.3 1.0 NE2 B:HIS33 2.0 15.1 1.0 SG B:CYS13 2.2 23.0 1.0 SG B:CYS10 2.4 27.3 1.0 CE1 B:HIS33 2.7 16.0 1.0 CE1 B:HIS29 2.8 10.2 1.0 CD2 B:HIS29 3.0 10.8 1.0 CD2 B:HIS33 3.1 14.8 1.0 CB B:CYS13 3.2 25.6 1.0 CB B:CYS10 3.4 29.6 1.0 N B:CYS13 3.5 25.8 1.0 ND1 B:HIS33 3.9 13.7 1.0 CA B:CYS13 3.9 27.2 1.0 ND1 B:HIS29 3.9 10.5 1.0 CG B:HIS33 4.1 13.7 1.0 CG B:HIS29 4.1 11.9 1.0 C B:LEU12 4.3 25.4 1.0 CB B:LEU12 4.5 21.2 1.0 C B:CYS13 4.6 30.7 1.0 N B:LEU12 4.7 26.5 1.0 CA B:LEU12 4.7 24.6 1.0 CA B:CYS10 4.8 32.0 1.0 CB B:LEU15 4.9 31.3 1.0 CD2 B:LEU15 5.0 26.8 1.0 O B:CYS13 5.0 31.9 1.0

Zinc binding site 4 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn102 b:2.5 occ:1.00 NE2 B:HIS56 1.9 6.3 1.0 NE2 B:HIS60 2.0 10.2 1.0 SG B:CYS40 2.1 10.5 1.0 SG B:CYS37 2.2 19.4 1.0 CE1 B:HIS56 2.8 4.5 1.0 CD2 B:HIS60 2.9 12.9 1.0 CD2 B:HIS56 3.0 6.0 1.0 CE1 B:HIS60 3.1 12.8 1.0 CB B:CYS37 3.1 12.8 1.0 CB B:CYS40 3.2 15.4 1.0 N B:CYS40 3.8 16.4 1.0 ND1 B:HIS56 3.9 2.2 1.0 CA B:CYS40 4.0 16.8 1.0 CG B:HIS56 4.0 4.7 1.0 CG B:HIS60 4.1 16.1 1.0 ND1 B:HIS60 4.2 15.4 1.0 CB B:GLU42 4.2 10.0 1.0 CB B:MET39 4.5 18.7 1.0 C B:CYS40 4.5 15.9 1.0 N B:SER41 4.6 14.1 1.0 CA B:CYS37 4.6 12.3 1.0 N B:GLU42 4.7 12.1 1.0 C B:MET39 4.7 19.4 1.0 C B:CYS37 4.9 13.4 1.0 N B:MET39 4.9 17.1 1.0 CA B:MET39 4.9 19.3 1.0 O B:CYS37 5.0 14.6 1.0

Zinc binding site 5 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn101 b:26.4 occ:1.00 NE2 C:HIS29 2.0 13.3 1.0 NE2 C:HIS33 2.0 22.2 1.0 SG C:CYS13 2.2 38.8 1.0 SG C:CYS10 2.4 31.7 1.0 CE1 C:HIS29 2.8 17.1 1.0 CE1 C:HIS33 2.9 24.2 1.0 CD2 C:HIS33 3.0 21.3 1.0 CD2 C:HIS29 3.0 14.0 1.0 CB C:CYS13 3.1 39.6 1.0 CB C:CYS10 3.1 30.6 1.0 N C:CYS13 3.4 36.2 1.0 CA C:CYS13 3.7 39.3 1.0 ND1 C:HIS29 4.0 17.7 1.0 ND1 C:HIS33 4.0 22.8 1.0 O C:CYS13 4.1 38.6 1.0 CG C:HIS33 4.1 21.2 1.0 CG C:HIS29 4.1 17.2 1.0 C C:CYS13 4.1 40.3 1.0 C C:LEU12 4.5 35.5 1.0 CA C:CYS10 4.6 30.5 1.0 CB C:LEU12 4.7 30.0 1.0 N C:LEU12 4.9 31.8 1.0 CA C:LEU12 4.9 32.6 1.0 CD1 C:LEU15 5.0 44.5 1.0

Zinc binding site 6 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn102 b:11.6 occ:1.00 NE2 C:HIS56 1.9 8.8 1.0 SG C:CYS40 1.9 10.1 1.0 NE2 C:HIS60 2.0 11.2 1.0 SG C:CYS37 2.3 21.4 1.0 CD2 C:HIS56 2.7 8.9 1.0 CE1 C:HIS56 2.9 7.0 1.0 CD2 C:HIS60 3.0 14.0 1.0 CE1 C:HIS60 3.0 12.3 1.0 CB C:CYS37 3.1 16.1 1.0 CB C:CYS40 3.4 13.7 1.0 N C:CYS40 3.8 15.6 1.0 CG C:HIS56 3.9 9.3 1.0 ND1 C:HIS56 4.0 6.7 1.0 ND1 C:HIS60 4.1 14.2 1.0 CA C:CYS40 4.1 15.3 1.0 CG C:HIS60 4.1 15.8 1.0 CB C:GLU42 4.4 12.0 1.0 CB C:MET39 4.5 17.8 1.0 CA C:CYS37 4.5 16.7 1.0 C C:CYS40 4.7 15.4 1.0 C C:MET39 4.7 18.0 1.0 N C:SER41 4.8 14.7 1.0 N C:GLU42 4.9 13.3 1.0 N C:MET39 4.9 18.3 1.0 C C:CYS37 4.9 17.7 1.0 CA C:MET39 4.9 18.6 1.0 CA C:VAL57 5.0 12.2 1.0

Zinc binding site 7 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn101 b:42.5 occ:1.00 NE2 D:HIS29 1.7 14.8 1.0 SG D:CYS13 2.0 42.9 1.0 NE2 D:HIS33 2.0 25.5 1.0 CE1 D:HIS29 2.5 18.1 1.0 CE1 D:HIS33 2.5 26.4 1.0 SG D:CYS10 2.7 46.5 1.0 CD2 D:HIS29 2.9 16.0 1.0 CB D:CYS13 3.2 46.5 1.0 CD2 D:HIS33 3.3 23.1 1.0 ND1 D:HIS29 3.7 18.3 1.0 ND1 D:HIS33 3.7 25.3 1.0 N D:CYS13 3.8 45.6 1.0 CB D:CYS10 3.9 47.2 1.0 CG D:HIS29 3.9 17.9 1.0 CA D:CYS13 4.0 47.8 1.0 CG D:HIS33 4.1 23.3 1.0 C D:LEU12 4.2 45.0 1.0 C D:CYS13 4.5 49.5 1.0 O D:CYS13 4.5 48.2 1.0 O D:LEU12 4.6 46.0 1.0 CA D:LEU12 4.8 43.3 1.0 N D:LEU12 4.8 43.2 1.0 CB D:LEU12 4.8 40.5 1.0 CB D:LEU15 4.9 45.5 1.0 CG D:LEU15 5.0 47.9 1.0 O D:HIS29 5.0 17.0 1.0

Zinc binding site 8 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn102 b:20.9 occ:1.00 SG D:CYS40 2.0 16.3 1.0 NE2 D:HIS56 2.0 13.4 1.0 NE2 D:HIS60 2.0 16.8 1.0 SG D:CYS37 2.5 25.8 1.0 CE1 D:HIS60 2.6 17.9 1.0 CE1 D:HIS56 2.8 12.3 1.0 CD2 D:HIS56 3.1 13.6 1.0 CD2 D:HIS60 3.1 19.2 1.0 CB D:CYS37 3.2 19.9 1.0 CB D:CYS40 3.4 21.1 1.0 N D:CYS40 3.6 20.9 1.0 ND1 D:HIS60 3.8 20.9 1.0 ND1 D:HIS56 4.0 10.7 1.0 CA D:CYS40 4.0 21.7 1.0 CG D:HIS60 4.0 21.8 1.0 CG D:HIS56 4.2 13.7 1.0 CB D:GLU42 4.2 17.5 1.0 CB D:MET39 4.3 23.2 1.0 C D:MET39 4.5 23.4 1.0 N D:GLU42 4.5 18.3 1.0 N D:SER41 4.6 20.1 1.0 CA D:CYS37 4.6 19.8 1.0 C D:CYS40 4.6 21.3 1.0 CA D:MET39 4.8 23.8 1.0 N D:MET39 4.9 22.8 1.0

Zinc binding site 9 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn101 b:39.5 occ:1.00 NE2 E:HIS29 1.8 16.0 1.0 NE2 E:HIS33 2.0 25.4 1.0 SG E:CYS13 2.1 39.3 1.0 SG E:CYS10 2.4 42.4 1.0 CE1 E:HIS29 2.6 17.5 1.0 CE1 E:HIS33 2.8 25.4 1.0 CD2 E:HIS29 3.0 16.8 1.0 CB E:CYS13 3.0 41.9 1.0 CD2 E:HIS33 3.0 23.8 1.0 CB E:CYS10 3.4 44.3 1.0 N E:CYS13 3.6 42.0 1.0 ND1 E:HIS29 3.8 18.1 1.0 CA E:CYS13 3.8 43.9 1.0 ND1 E:HIS33 4.0 23.3 1.0 CG E:HIS29 4.0 18.6 1.0 CG E:HIS33 4.1 22.2 1.0 C E:LEU12 4.3 41.5 1.0 C E:CYS13 4.4 46.8 1.0 CB E:LEU15 4.6 43.7 1.0 O E:CYS13 4.6 47.1 1.0 CB E:LEU12 4.8 36.7 1.0 N E:LEU12 4.8 41.6 1.0 CA E:LEU12 4.8 40.4 1.0 CA E:CYS10 4.8 46.2 1.0 N E:LEU15 5.0 47.5 1.0

Zinc binding site 10 out of 22 in the Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of the UBZ1AND2 Tandem of the Ubiquitin-Binding Adaptor Protein TAX1BP1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn102 b:30.9 occ:1.00 NE2 E:HIS60 1.8 21.5 1.0 NE2 E:HIS56 1.9 14.8 1.0 SG E:CYS40 1.9 17.8 1.0 SG E:CYS37 2.5 27.0 1.0 CE1 E:HIS56 2.6 15.7 1.0 CE1 E:HIS60 2.7 24.0 1.0 CD2 E:HIS60 2.9 21.8 1.0 CD2 E:HIS56 3.1 14.2 1.0 CB E:CYS37 3.2 20.3 1.0 CB E:CYS40 3.4 23.7 1.0 N E:CYS40 3.7 23.1 1.0 ND1 E:HIS56 3.8 14.6 1.0 ND1 E:HIS60 3.9 25.4 1.0 CG E:HIS60 4.0 24.6 1.0 CG E:HIS56 4.1 14.9 1.0 CA E:CYS40 4.1 24.2 1.0 CB E:GLU42 4.3 20.5 1.0 CB E:MET39 4.6 25.1 1.0 C E:CYS40 4.6 23.5 1.0 CA E:CYS37 4.7 19.7 1.0 N E:SER41 4.7 21.7 1.0 N E:GLU42 4.8 20.9 1.0 C E:MET39 4.9 25.1 1.0

M.A.Ceregido, M.Spinola-Amilibia, L.Buts, J.Rivera-Torres, A.Garcia-Pino, J.Bravo, N.A.J.Van Nuland. The Structure of TAX1BP1 UBZ1 + 2 Provides Insight Into Target Specificity and Adaptability J.Mol.Biol. V. 426 674 2014.
ISSN: ISSN 0022-2836
PubMed: 24239949
DOI: 10.1016/J.JMB.2013.11.006