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Zinc in PDB 3zpg: Acinetobacter Baumannii Ribd, Form 2

Enzymatic activity of Acinetobacter Baumannii Ribd, Form 2

All present enzymatic activity of Acinetobacter Baumannii Ribd, Form 2:
1.1.1.193; 3.5.4.26;

Protein crystallography data

The structure of Acinetobacter Baumannii Ribd, Form 2, PDB code: 3zpg was solved by A.Dawson, P.Trumper, G.Chrysostomou, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.63 / 1.99
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 72.998, 72.998, 201.456, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 23.7

Other elements in 3zpg:

The structure of Acinetobacter Baumannii Ribd, Form 2 also contains other interesting chemical elements:

Arsenic (As) 1 atom
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Acinetobacter Baumannii Ribd, Form 2 (pdb code 3zpg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Acinetobacter Baumannii Ribd, Form 2, PDB code: 3zpg:

Zinc binding site 1 out of 1 in 3zpg

Go back to Zinc Binding Sites List in 3zpg
Zinc binding site 1 out of 1 in the Acinetobacter Baumannii Ribd, Form 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Acinetobacter Baumannii Ribd, Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1358

b:54.5
occ:1.00
O1 A:CAC1364 2.0 52.0 1.0
ND1 A:HIS54 2.0 49.5 1.0
SG A:CYS79 2.4 64.6 1.0
SG A:CYS88 2.4 60.6 1.0
CE1 A:HIS54 2.9 49.9 1.0
CB A:CYS88 3.0 64.8 1.0
CG A:HIS54 3.0 47.3 1.0
AS A:CAC1364 3.1 50.2 1.0
O2 A:CAC1364 3.2 50.2 1.0
CB A:CYS79 3.4 64.2 1.0
CB A:HIS54 3.5 47.1 1.0
N A:CYS79 3.7 62.2 1.0
N A:CYS88 3.9 71.9 1.0
NE2 A:HIS54 3.9 47.2 1.0
CD2 A:HIS54 4.0 45.9 1.0
CA A:CYS88 4.0 68.6 1.0
C1 A:CAC1364 4.2 50.8 1.0
OE2 A:GLU56 4.2 51.5 1.0
CA A:CYS79 4.2 65.6 1.0
OE1 A:GLU56 4.5 50.3 1.0
CD A:GLU56 4.6 52.2 1.0
C2 A:CAC1364 4.7 48.0 1.0
C A:PRO78 4.8 61.4 1.0
CA A:PRO78 4.9 58.4 1.0
CA A:HIS54 5.0 45.9 1.0

Reference:

A.Dawson, P.Trumper, G.Chrysostomou, W.N.Hunter. Structure of Diaminohydroxyphosphoribosylaminopyrimidine Deaminase/5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase From Acinetobacter Baumannii. Acta Crystallogr.,Sect.F V. 69 611 2013.
ISSN: ESSN 1744-3091
PubMed: 23722836
DOI: 10.1107/S174430911301292X
Page generated: Wed Dec 16 04:59:37 2020

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