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Zinc in PDB 3zbv: Crystal Structure of Murine Angiogenin-2

Protein crystallography data

The structure of Crystal Structure of Murine Angiogenin-2, PDB code: 3zbv was solved by S.Iyer, D.E.Holloway, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.69 / 1.64
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.724, 89.724, 64.555, 90.00, 90.00, 90.00
R / Rfree (%) 19.764 / 20.12

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Murine Angiogenin-2 (pdb code 3zbv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Murine Angiogenin-2, PDB code: 3zbv:

Zinc binding site 1 out of 1 in 3zbv

Go back to Zinc Binding Sites List in 3zbv
Zinc binding site 1 out of 1 in the Crystal Structure of Murine Angiogenin-2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Murine Angiogenin-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1121

b:13.5
occ:1.00
OD1 A:ASP41 2.0 13.2 1.0
ND1 A:HIS82 2.1 11.9 1.0
CE1 A:HIS82 3.0 11.8 1.0
CG A:ASP41 3.0 12.7 1.0
CG A:HIS82 3.1 12.0 1.0
OD2 A:ASP41 3.3 13.0 1.0
CB A:HIS82 3.5 12.3 1.0
O A:CYS39 4.1 15.3 1.0
NE2 A:HIS82 4.2 12.0 1.0
CD2 A:HIS82 4.3 12.1 1.0
CB A:ASP41 4.3 12.3 1.0
CA A:ASP41 4.6 12.0 1.0
O A:GLY84 4.7 15.6 1.0
CA A:HIS82 4.9 12.4 1.0
CB A:CYS39 5.0 15.3 1.0

Reference:

S.Iyer, D.E.Holloway, K.R.Acharya. Crystal Structures of Murine Angiogenin-2 and -3 - Probing 'Structure - Function' Relationships Amongst Angiogenin Homologues. Febs J. V. 280 302 2013.
ISSN: ISSN 1742-464X
PubMed: 23170778
DOI: 10.1111/FEBS.12071
Page generated: Sat Oct 26 18:25:57 2024

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