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Zinc in PDB 3w3s: Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs

Enzymatic activity of Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs

All present enzymatic activity of Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs:
6.1.1.11;

Protein crystallography data

The structure of Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs, PDB code: 3w3s was solved by Y.Itoh, S.Sekine, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.82 / 3.10
Space group I 4 3 2
Cell size a, b, c (Å), α, β, γ (°) 272.817, 272.817, 272.817, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 26

Other elements in 3w3s:

The structure of Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs also contains other interesting chemical elements:

Platinum (Pt) 15 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs (pdb code 3w3s). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs, PDB code: 3w3s:

Zinc binding site 1 out of 1 in 3w3s

Go back to Zinc Binding Sites List in 3w3s
Zinc binding site 1 out of 1 in the Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A. Aeolicus Trnasec in Complex with M. Kandleri Serrs within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:0.2
occ:1.00
 N10 A:SSA2002 2.2 76.4 0.5
OE2 A:GLU368 2.2 0.5 1.0
SG A:CYS319 2.4 0.3 1.0
SG A:CYS478 2.4 0.4 1.0
CB A:CYS319 3.0 0.3 1.0
CA A:SSA2002 3.2 71.5 0.5
CB A:SSA2002 3.2 67.6 0.5
CB A:CYS478 3.2 82.8 1.0
CD A:GLU368 3.4 0.6 1.0
OG A:SSA2002 3.4 68.0 0.5
O A:ALA317 3.8 0.8 1.0
CZ A:PHE409 3.9 0.2 0.8
OE1 A:GLU368 4.0 0.8 1.0
CE2 A:PHE409 4.1 0.6 0.8
CA A:CYS319 4.3 0.0 1.0
N A:CYS319 4.3 0.6 1.0
C9 A:SSA2002 4.5 70.9 0.5
C A:ALA317 4.5 0.2 1.0
CE1 A:PHE409 4.5 0.3 0.8
PT A:PT2004 4.6 0.8 0.3
CG A:GLU368 4.6 0.5 1.0
CA A:CYS478 4.6 88.5 1.0
ND2 A:ASN454 4.6 94.6 1.0
OH A:TYR323 4.7 92.4 1.0
O9 A:SSA2002 4.7 78.1 0.5
CB A:ALA317 4.9 0.1 1.0
NE2 A:HIS456 4.9 0.9 1.0
CD2 A:PHE409 5.0 0.2 0.8

Reference:

Y.Itoh, S.Sekine, S.Suetsugu, S.Yokoyama. Tertiary Structure of Bacterial Selenocysteine Trna Nucleic Acids Res. V. 41 6729 2013.
ISSN: ISSN 0305-1048
PubMed: 23649835
DOI: 10.1093/NAR/GKT321
Page generated: Wed Dec 16 04:56:56 2020

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