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Zinc in PDB 3vtg: High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish)

Enzymatic activity of High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish)

All present enzymatic activity of High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish):
3.4.24.67;

Protein crystallography data

The structure of High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish), PDB code: 3vtg was solved by N.Kudo, S.Yasumasu, I.Iuchi, M.Tanokura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.34
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.006, 30.461, 79.653, 90.00, 123.69, 90.00
R / Rfree (%) 18.7 / 20.4

Zinc Binding Sites:

The binding sites of Zinc atom in the High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish) (pdb code 3vtg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish), PDB code: 3vtg:

Zinc binding site 1 out of 1 in 3vtg

Go back to Zinc Binding Sites List in 3vtg
Zinc binding site 1 out of 1 in the High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme Zinc-Protease From Oryzias Latipes (Medaka Fish) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:8.3
occ:1.00
 NE2 A:HIS109 2.0 7.9 1.0
NE2 A:HIS99 2.1 7.4 1.0
NE2 A:HIS103 2.1 7.2 1.0
O A:HOH558 2.1 11.2 1.0
O A:HOH537 2.3 14.0 1.0
CE1 A:HIS109 3.0 7.9 1.0
CD2 A:HIS99 3.0 7.4 1.0
CD2 A:HIS109 3.0 7.9 1.0
CD2 A:HIS103 3.1 7.4 1.0
CE1 A:HIS99 3.1 7.3 1.0
CE1 A:HIS103 3.1 7.4 1.0
ND1 A:HIS109 4.1 8.0 1.0
CG A:HIS109 4.2 8.0 1.0
CG A:HIS99 4.2 7.4 1.0
ND1 A:HIS99 4.2 7.3 1.0
ND1 A:HIS103 4.3 7.4 1.0
OE2 A:GLU100 4.3 9.6 1.0
CG A:HIS103 4.3 7.4 1.0
O A:HOH472 4.3 14.8 1.0
O A:HOH556 4.4 22.1 1.0
O A:HOH485 4.4 15.1 1.0
OE1 A:GLU100 4.6 9.5 1.0
CD A:GLU100 4.8 9.1 1.0
CE A:MET153 4.8 7.7 1.0
CE1 A:TYR155 5.0 8.0 1.0

Reference:

N.Kudo, S.Yasumasu, I.Iuchi, M.Tanokura. Crystal Structure of High Choriolytic Enzyme 1 (Hce-1), A Hatching Enzyme From Oryzias Latipes (Medaka Fish) To Be Published.
Page generated: Wed Dec 16 04:56:35 2020

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