Zinc in PDB 3vm8: Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface

The structure of Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface, PDB code: 3vm8 was solved by S.Kitamura, A.Suzuki, N.Watanabe, Y.Iwatani, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	90.43 / 3.00
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	104.419, 104.419, 74.502, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 30.2

The binding sites of Zinc atom in the Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface (pdb code 3vm8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface, PDB code: 3vm8:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:61.8 occ:1.00 SG A:CYS100 1.8 47.5 1.0 ND1 A:HIS66 2.0 50.0 1.0 SG A:CYS97 2.6 55.0 1.0 CE1 A:HIS66 2.8 49.1 1.0 CB A:CYS100 3.0 48.9 1.0 CG A:HIS66 3.1 51.9 1.0 CB A:CYS97 3.5 52.4 1.0 CB A:HIS66 3.6 53.2 1.0 OE1 A:GLU68 3.8 53.5 1.0 N A:CYS97 3.8 51.6 1.0 NE2 A:HIS66 4.0 49.4 1.0 OE2 A:GLU68 4.1 51.0 1.0 CD A:GLU68 4.1 51.5 1.0 CA A:CYS100 4.2 49.1 1.0 N A:CYS100 4.2 49.1 1.0 CD2 A:HIS66 4.2 51.1 1.0 CA A:CYS97 4.2 51.7 1.0 O A:CYS97 4.6 53.2 1.0 C A:CYS97 4.8 52.1 1.0 C A:PRO96 4.9 48.3 1.0 NH1 A:ARG69 5.0 73.7 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn202 b:58.2 occ:1.00 ND1 B:HIS66 2.3 61.0 1.0 SG B:CYS97 2.3 65.9 1.0 SG B:CYS100 2.3 58.8 1.0 CB B:CYS100 3.0 58.0 1.0 CE1 B:HIS66 3.0 60.8 1.0 CG B:HIS66 3.1 61.2 1.0 OE1 B:GLU68 3.4 55.6 1.0 CB B:HIS66 3.6 60.7 1.0 CD B:GLU68 3.9 55.8 1.0 CB B:CYS97 4.0 64.8 1.0 NE2 B:HIS66 4.1 62.0 1.0 CD2 B:HIS66 4.2 60.5 1.0 OE2 B:GLU68 4.2 55.3 1.0 CA B:CYS100 4.3 59.2 1.0 N B:CYS97 4.3 62.9 1.0 OD1 B:ASP99 4.3 72.1 1.0 N B:CYS100 4.5 62.7 1.0 CA B:CYS97 4.7 65.3 1.0 CG B:GLU68 4.8 55.4 1.0 CB B:GLU68 4.8 55.3 1.0

S.Kitamura, H.Ode, M.Nakashima, M.Imahashi, Y.Naganawa, S.Ibe, Y.Yokomaku, N.Watanabe, A.Suzuki, W.Sugiura, Y.Iwatani. Crystal Structure of the Human APOBEC3C Having Hiv-1 Vif-Binding Interface To Be Published.