Zinc in PDB 3vht: Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin

All present enzymatic activity of Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin:
3.6.1.3;

The structure of Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin, PDB code: 3vht was solved by N.Suzuki, S.Wakatsuki, M.Kawasaki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.40
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	88.950, 143.692, 106.864, 90.00, 90.00, 90.00
R / Rfree (%)	19.1 / 23.8

The binding sites of Zinc atom in the Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin (pdb code 3vht). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin, PDB code: 3vht:

Zinc binding site 1 out of 1 in the Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Gfp-WRNIP1 Ubz Domain Fusion Protein in Complex with Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:29.2 occ:1.00 NE2 B:HIS259 1.8 22.5 1.0 SG B:CYS263 2.3 28.1 1.0 SG B:CYS244 2.3 23.9 1.0 SG B:CYS247 2.4 25.3 1.0 CE1 B:HIS259 2.8 20.4 1.0 CD2 B:HIS259 2.9 21.6 1.0 CB B:CYS244 3.1 22.6 1.0 CB B:CYS263 3.2 24.6 1.0 CB B:CYS247 3.5 24.2 1.0 N B:CYS247 3.7 25.2 1.0 ND1 B:HIS259 3.9 23.0 1.0 CG B:HIS259 4.0 23.2 1.0 CA B:CYS247 4.1 25.4 1.0 CB B:VAL246 4.1 26.6 1.0 CA B:CYS244 4.6 22.3 1.0 C B:VAL246 4.6 26.2 1.0 CA B:CYS263 4.6 25.2 1.0 CA B:VAL246 4.7 25.9 1.0 N B:VAL246 4.8 25.6 1.0 C B:CYS247 4.8 24.6 1.0 CG1 B:VAL246 4.9 27.1 1.0 N B:GLN248 4.9 25.9 1.0 CE B:MET251 5.0 25.1 1.0

N.Suzuki, A.Rohaim, R.Kato, I.Dikic, S.Wakatsuki, M.Kawasaki. A Novel Mode of Ubiquitin Recognition By the Ubiquitin-Binding Zinc Finger Domain of WRNIP1. Febs J. 2016.
ISSN: ISSN 1742-464X
PubMed: 27062441
DOI: 10.1111/FEBS.13734