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Zinc in PDB 3uwa: Crystal Structure of A Probable Peptide Deformylase From Synechococcus Phage S-SSM7

Protein crystallography data

The structure of Crystal Structure of A Probable Peptide Deformylase From Synechococcus Phage S-SSM7, PDB code: 3uwa was solved by D.Lorimer, J.Abendroth, T.E.Edwards, A.Burgin, A.Segall, F.Rohwer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.73 / 1.95
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.460, 58.630, 62.390, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 20.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Probable Peptide Deformylase From Synechococcus Phage S-SSM7 (pdb code 3uwa). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Probable Peptide Deformylase From Synechococcus Phage S-SSM7, PDB code: 3uwa:

Zinc binding site 1 out of 1 in 3uwa

Go back to Zinc Binding Sites List in 3uwa
Zinc binding site 1 out of 1 in the Crystal Structure of A Probable Peptide Deformylase From Synechococcus Phage S-SSM7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Probable Peptide Deformylase From Synechococcus Phage S-SSM7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn200

b:15.7
occ:1.00
O A:HOH221 2.0 13.3 1.0
NE2 A:HIS138 2.1 14.1 1.0
NE2 A:HIS134 2.1 14.8 1.0
SG A:CYS92 2.3 15.3 1.0
CD2 A:HIS134 2.9 14.2 1.0
CD2 A:HIS138 3.0 13.7 1.0
CE1 A:HIS138 3.1 15.1 1.0
CE1 A:HIS134 3.3 15.1 1.0
CB A:CYS92 3.4 16.6 1.0
O A:HOH154 3.5 15.0 1.0
O A:HOH222 3.7 14.8 1.0
NE2 A:GLN49 3.7 15.6 1.0
OE1 A:GLN49 3.9 14.7 1.0
OE2 A:GLU135 4.0 16.4 1.0
CD A:GLN49 4.0 15.8 1.0
CA A:CYS92 4.0 17.0 1.0
CG A:HIS134 4.1 14.2 1.0
ND1 A:HIS138 4.2 15.2 1.0
CG A:HIS138 4.2 14.4 1.0
ND1 A:HIS134 4.3 14.6 1.0
OE1 A:GLU135 4.3 15.9 1.0
O A:HOH225 4.3 13.8 1.0
CD A:GLU135 4.5 15.6 1.0
N A:LEU93 4.8 18.4 1.0
O A:GLY91 4.8 17.5 1.0
C A:CYS92 4.8 18.1 1.0
O A:HOH166 4.9 29.9 1.0

Reference:

J.A.Frank, D.Lorimer, M.Youle, P.Witte, T.Craig, J.Abendroth, F.Rohwer, R.A.Edwards, A.M.Segall, A.B.Burgin. Structure and Function of A Cyanophage-Encoded Peptide Deformylase. Isme J V. 7 1150 2013.
ISSN: ISSN 1751-7362
PubMed: 23407310
DOI: 10.1038/ISMEJ.2013.4
Page generated: Wed Dec 16 04:55:13 2020

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