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Zinc in PDB 3usn: Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure

Enzymatic activity of Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure

All present enzymatic activity of Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure:
3.4.24.17;

Other elements in 3usn:

The structure of Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure (pdb code 3usn). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure, PDB code: 3usn:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3usn

Go back to Zinc Binding Sites List in 3usn
Zinc binding site 1 out of 2 in the Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn169

b:0.0
occ:1.00
NE2 A:HIS119 2.6 0.0 1.0
NE2 A:HIS123 2.6 0.0 1.0
NE2 A:HIS129 2.6 0.0 1.0
S2 A:ATT174 2.7 0.0 1.0
HE1 A:HIS119 3.0 0.0 1.0
C12 A:ATT174 3.2 0.0 1.0
CE1 A:HIS119 3.2 0.0 1.0
CD2 A:HIS123 3.4 0.0 1.0
S1 A:ATT174 3.5 0.0 1.0
HD2 A:HIS123 3.5 0.0 1.0
CE1 A:HIS129 3.6 0.0 1.0
CE1 A:HIS123 3.6 0.0 1.0
CD2 A:HIS129 3.6 0.0 1.0
HE1 A:HIS129 3.7 0.0 1.0
HA A:PRO139 3.7 0.0 1.0
CD2 A:HIS119 3.7 0.0 1.0
OE1 A:GLU120 3.8 0.0 1.0
HD2 A:HIS129 3.8 0.0 1.0
HE1 A:HIS123 3.9 0.0 1.0
HD2 A:HIS119 4.2 0.0 1.0
N3 A:ATT174 4.2 0.0 1.0
HD13 A:LEU82 4.4 0.0 1.0
ND1 A:HIS119 4.4 0.0 1.0
HE2 A:GLU120 4.4 0.0 1.0
O A:PRO139 4.6 0.0 1.0
CG A:HIS123 4.6 0.0 1.0
CG A:HIS119 4.7 0.0 1.0
ND1 A:HIS123 4.7 0.0 1.0
CA A:PRO139 4.8 0.0 1.0
O A:TYR138 4.8 0.0 1.0
C11 A:ATT174 4.8 0.0 1.0
CG A:HIS129 4.8 0.0 1.0
ND1 A:HIS129 4.8 0.0 1.0
CD A:GLU120 4.8 0.0 1.0
HE2 A:MET137 4.8 0.0 1.0
N4 A:ATT174 4.9 0.0 1.0
C A:PRO139 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 3usn

Go back to Zinc Binding Sites List in 3usn
Zinc binding site 2 out of 2 in the Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of the Catalytic Domain of Human Fibroblast Stromelysin-1 Inhibited with the Thiadiazole Inhibitor Ipnu-107859, uc(Nmr), 1 Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn170

b:0.0
occ:1.00
HD2 A:ASP71 2.0 0.0 1.0
OD2 A:ASP71 2.3 0.0 1.0
HE2 A:TYR86 2.5 0.0 1.0
NE2 A:HIS69 2.6 0.0 1.0
ND1 A:HIS97 2.6 0.0 1.0
NE2 A:HIS84 2.6 0.0 1.0
HE1 A:HIS69 2.7 0.0 1.0
CE1 A:HIS97 2.8 0.0 1.0
HD2 A:HIS84 2.8 0.0 1.0
CG A:HIS97 2.9 0.0 1.0
CG A:ASP71 3.0 0.0 1.0
CE1 A:HIS69 3.0 0.0 1.0
CD2 A:HIS84 3.1 0.0 1.0
HE1 A:HIS97 3.3 0.0 1.0
NE2 A:HIS97 3.3 0.0 1.0
CD2 A:HIS97 3.3 0.0 1.0
HH A:TYR86 3.5 0.0 1.0
OD1 A:ASP71 3.5 0.0 1.0
HB3 A:HIS97 3.5 0.0 1.0
CE2 A:TYR86 3.6 0.0 1.0
HB2 A:HIS97 3.6 0.0 1.0
CB A:HIS97 3.6 0.0 1.0
HB3 A:ASP71 3.7 0.0 1.0
CB A:ASP71 3.9 0.0 1.0
CD2 A:HIS69 3.9 0.0 1.0
CE1 A:HIS84 3.9 0.0 1.0
HD2 A:HIS97 4.0 0.0 1.0
HE2 A:HIS97 4.0 0.0 1.0
HB2 A:ASP71 4.1 0.0 1.0
OH A:TYR86 4.2 0.0 1.0
ND1 A:HIS69 4.3 0.0 1.0
CZ A:TYR86 4.4 0.0 1.0
HD2 A:TYR86 4.4 0.0 1.0
HE1 A:HIS84 4.4 0.0 1.0
CG A:HIS84 4.5 0.0 1.0
CD2 A:TYR86 4.5 0.0 1.0
HD2 A:HIS69 4.5 0.0 1.0
CG A:HIS69 4.7 0.0 1.0
ND1 A:HIS84 4.9 0.0 1.0
HD1 A:HIS69 5.0 0.0 1.0

Reference:

B.J.Stockman, D.J.Waldon, J.A.Gates, T.A.Scahill, D.A.Kloosterman, S.A.Mizsak, E.J.Jacobsen, K.L.Belonga, M.A.Mitchell, B.Mao, J.D.Petke, L.Goodman, E.A.Powers, S.R.Ledbetter, P.S.Kaytes, G.Vogeli, V.P.Marshall, G.L.Petzold, R.A.Poorman. Solution Structures of Stromelysin Complexed to Thiadiazole Inhibitors. Protein Sci. V. 7 2281 1998.
ISSN: ISSN 0961-8368
PubMed: 9827994
Page generated: Wed Dec 16 04:55:05 2020

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