Zinc in PDB 3urz: Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution

The structure of Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution, PDB code: 3urz was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.58 / 2.19
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	30.703, 41.597, 236.878, 90.00, 92.52, 90.00
R / Rfree (%)	21.7 / 24

The binding sites of Zinc atom in the Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution (pdb code 3urz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution, PDB code: 3urz:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn250 b:97.7 occ:1.00 OE2 A:GLU115 2.0 0.1 1.0 OE2 A:GLU111 2.3 100.0 1.0 O A:HOH302 2.6 73.8 1.0 CD A:GLU115 2.8 97.6 1.0 CD A:GLU111 3.1 0.3 1.0 OE1 A:GLU115 3.1 95.8 1.0 CG A:GLU111 3.3 98.3 1.0 CG A:GLU115 4.1 95.1 1.0 OE1 A:GLU111 4.3 0.2 1.0 CB A:GLU111 4.6 94.3 1.0 O A:GLU111 4.7 87.8 1.0 C A:GLU111 4.8 88.5 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn260 b:0.7 occ:1.00 O A:HOH303 2.0 76.6 1.0 OE2 A:GLU137 2.1 0.4 1.0 OD1 A:ASP139 2.5 0.0 1.0 OD2 A:ASP139 2.9 0.9 1.0 CG A:ASP139 3.0 1.0 1.0 CD A:GLU137 3.1 0.6 1.0 CG A:GLU137 3.5 0.7 1.0 OE1 A:GLU137 4.2 0.9 1.0 NH2 A:ARG205 4.3 0.6 1.0 O A:ASP139 4.3 0.4 1.0 C A:ASP139 4.3 0.9 1.0 CB A:ASP139 4.3 1.0 1.0 N A:ASN140 4.6 0.0 1.0 CA A:ASP139 4.7 0.2 1.0 N A:ASP139 4.9 0.1 1.0 CA A:ASN140 5.0 0.6 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn250 b:56.0 occ:1.00 OE2 B:GLU111 2.0 50.3 1.0 O B:HOH304 2.1 64.6 1.0 OE2 B:GLU115 2.1 59.2 1.0 CD B:GLU115 2.9 62.2 1.0 OE1 B:GLU115 3.0 64.9 1.0 CD B:GLU111 3.0 57.2 1.0 CG B:GLU111 3.3 51.2 1.0 O B:HOH341 3.9 67.3 1.0 O B:HOH317 3.9 53.9 1.0 OE1 B:GLU111 4.1 55.4 1.0 CG B:GLU115 4.3 61.6 1.0 O B:HOH310 4.3 51.3 1.0 CB B:GLU111 4.6 49.0 1.0 O B:GLU111 4.8 44.8 1.0 C B:GLU111 4.9 48.3 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Protein Binding Protein (BACOVA_03105) From Bacteroides Ovatus Atcc 8483 at 2.19 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn260 b:59.4 occ:1.00 OE2 B:GLU137 2.1 65.2 1.0 O2 B:EDO301 2.1 61.7 1.0 OD1 B:ASP139 2.1 72.8 1.0 OD2 B:ASP139 2.8 71.0 1.0 CG B:ASP139 2.8 66.6 1.0 CD B:GLU137 3.0 61.3 1.0 CG B:GLU137 3.3 60.1 1.0 C2 B:EDO301 3.4 0.7 1.0 O B:HOH325 3.8 58.7 1.0 O B:HOH306 4.1 66.2 1.0 OE1 B:GLU137 4.2 54.8 1.0 CB B:ASP139 4.3 65.1 1.0 O1 B:EDO301 4.3 0.0 1.0 C1 B:EDO301 4.4 0.0 1.0 C B:ASP139 4.6 61.3 1.0 CB B:GLU137 4.8 56.2 1.0 O B:ASP139 4.8 60.3 1.0 CA B:ASP139 4.8 61.9 1.0 N B:ASN140 4.9 59.8 1.0 N B:ASP139 5.0 59.1 1.0 NH2 B:ARG205 5.0 99.6 0.5

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.