Atomistry » Zinc » PDB 3ujz-3v2j » 3uko
Atomistry »
  Zinc »
    PDB 3ujz-3v2j »
      3uko »

Zinc in PDB 3uko: Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh

Enzymatic activity of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh

All present enzymatic activity of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh:
1.1.1.1; 1.1.1.284;

Protein crystallography data

The structure of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh, PDB code: 3uko was solved by A.Weichsel, J.Crotty, W.R.Montfort, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.92 / 1.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.244, 92.244, 172.872, 90.00, 90.00, 120.00
R / Rfree (%) 18 / 23.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh (pdb code 3uko). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh, PDB code: 3uko:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3uko

Go back to Zinc Binding Sites List in 3uko
Zinc binding site 1 out of 4 in the Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn400

b:20.8
occ:1.00
 SG A:CYS113 2.3 21.6 0.5
SG A:CYS102 2.3 22.5 1.0
SG A:CYS105 2.3 21.4 1.0
SG A:CYS99 2.4 21.3 1.0
SG A:CYS113 2.4 19.1 0.5
CB A:CYS113 3.2 22.3 0.5
CB A:CYS102 3.3 25.0 1.0
CB A:CYS113 3.4 20.7 0.5
CB A:CYS99 3.4 18.7 1.0
CB A:CYS105 3.4 19.6 1.0
N A:CYS99 3.6 20.3 1.0
CA A:CYS113 3.7 22.8 0.5
N A:CYS102 3.8 23.2 1.0
CA A:CYS113 3.8 21.6 0.5
CA A:CYS99 3.9 20.6 1.0
N A:ARG100 3.9 19.8 1.0
CA A:CYS102 4.1 25.0 1.0
N A:GLY114 4.2 33.9 1.0
N A:CYS105 4.2 24.2 1.0
C A:CYS99 4.3 19.3 1.0
C A:CYS113 4.4 25.9 0.5
C A:CYS113 4.4 26.3 0.5
CA A:CYS105 4.4 21.5 1.0
N A:GLU101 4.4 21.8 1.0
CB A:LYS115 4.5 26.3 1.0
N A:LYS115 4.7 25.5 1.0
C A:GLU98 4.7 21.1 1.0
C A:CYS102 4.8 26.1 1.0
CA A:ARG100 4.9 20.4 1.0
N A:CYS113 4.9 25.5 0.5
O A:CYS102 4.9 25.6 1.0
C A:GLU101 4.9 23.3 1.0

Zinc binding site 2 out of 4 in 3uko

Go back to Zinc Binding Sites List in 3uko
Zinc binding site 2 out of 4 in the Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:28.0
occ:1.00
 OE2 A:GLU70 2.1 31.1 1.0
NE2 A:HIS69 2.1 21.9 1.0
SG A:CYS177 2.3 31.3 1.0
SG A:CYS47 2.3 27.7 1.0
CE1 A:HIS69 3.0 22.6 1.0
CD A:GLU70 3.0 29.1 1.0
CD2 A:HIS69 3.1 25.9 1.0
CB A:CYS177 3.2 27.5 1.0
CG A:GLU70 3.4 30.9 1.0
CB A:CYS47 3.4 30.7 1.0
NH2 A:ARG372 3.9 30.2 1.0
O A:HOH415 3.9 43.5 1.0
OE1 A:GLU70 4.1 26.8 1.0
ND1 A:HIS69 4.1 26.4 1.0
CG A:HIS69 4.2 25.6 1.0
OG1 A:THR49 4.5 28.6 1.0
CZ A:ARG372 4.5 27.0 1.0
CB A:THR49 4.6 25.7 1.0
NE A:ARG372 4.6 28.7 1.0
CA A:CYS47 4.7 30.1 1.0
CA A:CYS177 4.7 24.9 1.0
N A:CYS47 4.8 28.6 1.0
CB A:GLU70 4.8 28.7 1.0
N A:GLY178 4.9 27.1 1.0
O A:HOH437 4.9 22.0 1.0

Zinc binding site 3 out of 4 in 3uko

Go back to Zinc Binding Sites List in 3uko
Zinc binding site 3 out of 4 in the Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn400

b:21.5
occ:1.00
 SG B:CYS99 2.3 21.7 1.0
SG B:CYS113 2.3 21.1 0.5
SG B:CYS113 2.3 21.0 0.5
SG B:CYS102 2.3 22.3 1.0
SG B:CYS105 2.3 18.4 1.0
CB B:CYS113 3.2 23.7 0.5
CB B:CYS105 3.3 23.2 1.0
CB B:CYS99 3.3 17.7 1.0
CB B:CYS113 3.4 22.7 0.5
CB B:CYS102 3.4 23.0 1.0
N B:CYS99 3.6 18.5 1.0
O B:CYS113 3.8 39.6 0.5
CA B:CYS113 3.8 24.9 0.5
CA B:CYS99 3.9 20.4 1.0
C B:CYS113 3.9 23.9 0.5
N B:CYS102 3.9 24.2 1.0
CA B:CYS113 3.9 25.5 0.5
N B:ARG100 4.0 18.0 1.0
N B:CYS105 4.2 21.7 1.0
CA B:CYS102 4.2 22.9 1.0
C B:CYS99 4.3 21.6 1.0
CA B:CYS105 4.3 20.8 1.0
CB B:LYS115 4.4 19.5 0.5
N B:GLU101 4.4 22.9 1.0
N B:LYS115 4.5 26.4 0.5
CA B:GLY114 4.5 29.9 0.5
CB B:LYS115 4.6 24.4 0.5
N B:GLY114 4.7 28.2 0.5
C B:GLU98 4.7 19.1 1.0
C B:CYS102 4.9 23.6 1.0
C B:CYS113 4.9 22.3 0.5
O B:CYS102 4.9 24.0 1.0
CA B:ARG100 5.0 20.8 1.0
N B:CYS113 5.0 22.8 0.5
N B:LYS115 5.0 23.5 0.5

Zinc binding site 4 out of 4 in 3uko

Go back to Zinc Binding Sites List in 3uko
Zinc binding site 4 out of 4 in the Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex with Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn401

b:24.7
occ:1.00
 NE2 B:HIS69 2.0 18.6 1.0
OE2 B:GLU70 2.0 24.8 1.0
SG B:CYS47 2.2 24.2 1.0
SG B:CYS177 2.3 29.0 1.0
CE1 B:HIS69 3.0 19.6 1.0
CD B:GLU70 3.1 23.9 1.0
CD2 B:HIS69 3.1 18.1 1.0
CB B:CYS177 3.2 24.2 1.0
CB B:CYS47 3.3 24.8 1.0
CG B:GLU70 3.4 20.3 1.0
NH2 B:ARG372 3.8 23.2 1.0
ND1 B:HIS69 4.1 18.0 1.0
CG B:HIS69 4.2 20.5 1.0
OE1 B:GLU70 4.2 23.4 1.0
O B:HOH541 4.3 34.1 1.0
OG1 B:THR49 4.4 31.5 1.0
CA B:CYS47 4.6 25.5 1.0
CA B:CYS177 4.7 23.5 1.0
CB B:THR49 4.7 27.7 1.0
CZ B:ARG372 4.7 20.3 1.0
N B:GLY178 4.8 23.7 1.0
N B:CYS47 4.8 23.2 1.0
CB B:GLU70 4.9 17.6 1.0

Reference:

J.Crotty, M.Greving, S.Brettschneider, A.Weichsel, G.F.Wildner, E.Vierling, W.R.Montfort. Crystal Structure and Kinetic Behavior of Alcohol Dehydrogenase III /S-Nitrosoglutathione Reductase From Arabidopsis Thaliana To Be Published.
Page generated: Sat Oct 26 17:24:23 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy