The binding sites of Zinc atom in the structure of Mutm Set 1 Gpgo (pdb code 3u6d). This binding sites where shown with 5.0 Angstroms radius around Zinc atom. The 3u6d structure was solved by R.J.SUNG, M.ZHANG, Y.QI, G.L.VERDINE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 32.7-1.9 | Space group | P212121 | a (A) | 45.188 | b (A) | 93.541 | c (A) | 104.650 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 90.00 | Rfactor (%) | 18.6 | Rfree (%) | 21.6 |
|
Zinc binding site 1 out of 1 in 3u6d
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 3u6d. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Phe182, A: Cys249, A: Arg251, A: Cys252, A: Gly253, A: Thr254, A: Cys269, A: Arg271, A: Cys272, | conact list:
Atom | Atom | Distance (A) | Zn | CZ A:Phe182 | 4.61 | Zn | CE1 A:Phe182 | 4.10 | Zn | CB A:Cys249 | 3.13 | Zn | SG A:Cys249 | 2.39 | Zn | CA A:Cys249 | 4.61 | Zn | N A:Arg251 | 4.99 | Zn | N A:Arg251 | 4.99 | Zn | CB A:Arg251 | 4.64 | Zn | CB A:Arg251 | 4.57 | Zn | C A:Arg251 | 4.71 | Zn | C A:Arg251 | 4.72 | Zn | N A:Cys252 | 3.85 | Zn | CB A:Cys252 | 3.40 | Zn | SG A:Cys252 | 2.35 | Zn | C A:Cys252 | 4.82 | Zn | CA A:Cys252 | 4.17 | Zn | N A:Gly253 | 4.90 | Zn | CB A:Thr254 | 4.73 | Zn | OG1 A:Thr254 | 4.88 | Zn | CB A:Cys269 | 3.38 | Zn | SG A:Cys269 | 2.34 | Zn | CA A:Cys269 | 4.78 | Zn | CB A:Arg271 | 4.60 | Zn | C A:Arg271 | 4.77 | Zn | N A:Cys272 | 3.74 | Zn | CB A:Cys272 | 3.29 | Zn | SG A:Cys272 | 2.28 | Zn | CA A:Cys272 | 4.09 |
| interactive model:
|
|