Atomistry » Zinc » PDB 3pfo-3pt6 » 3ps2
Atomistry »
  Zinc »
    PDB 3pfo-3pt6 »
      3ps2 »

Zinc in PDB 3ps2: Crystal Structure of the Escherichia Coli Lpxc/Lpc-012 Complex

Protein crystallography data

The structure of Crystal Structure of the Escherichia Coli Lpxc/Lpc-012 Complex, PDB code: 3ps2 was solved by C.-J.Lee, P.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.86 / 2.30
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 107.449, 107.449, 53.422, 90.00, 90.00, 120.00
R / Rfree (%) 20.7 / 26.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Escherichia Coli Lpxc/Lpc-012 Complex (pdb code 3ps2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Escherichia Coli Lpxc/Lpc-012 Complex, PDB code: 3ps2:

Zinc binding site 1 out of 1 in 3ps2

Go back to Zinc Binding Sites List in 3ps2
Zinc binding site 1 out of 1 in the Crystal Structure of the Escherichia Coli Lpxc/Lpc-012 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Escherichia Coli Lpxc/Lpc-012 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:28.1
occ:1.00
OD1 A:ASP242 2.0 22.9 1.0
O01 A:ZH4401 2.1 31.2 1.0
NE2 A:HIS238 2.1 28.1 1.0
NE2 A:HIS79 2.1 21.9 1.0
OD2 A:ASP242 2.2 25.6 1.0
O04 A:ZH4401 2.2 30.1 1.0
CG A:ASP242 2.4 26.2 1.0
C02 A:ZH4401 2.8 19.7 1.0
N03 A:ZH4401 2.9 23.6 1.0
CE1 A:HIS238 2.9 26.1 1.0
CD2 A:HIS79 3.0 15.8 1.0
CD2 A:HIS238 3.1 24.7 1.0
HE1 A:HIS238 3.1 31.3 1.0
CE1 A:HIS79 3.1 18.0 1.0
HD2 A:HIS79 3.1 18.9 1.0
HD2 A:HIS238 3.3 29.6 1.0
HE1 A:HIS79 3.3 21.5 1.0
HG1 A:THR191 3.6 29.0 1.0
HB A:THR191 3.6 36.0 1.0
HG3 A:GLU78 3.9 22.4 1.0
CB A:ASP242 3.9 29.8 1.0
ND1 A:HIS238 4.0 24.2 1.0
HE1 A:HIS265 4.1 29.4 1.0
OG1 A:THR191 4.1 24.3 1.0
CG A:HIS238 4.1 29.9 1.0
CG A:HIS79 4.2 21.7 1.0
ND1 A:HIS79 4.2 27.3 1.0
HG2 A:GLU78 4.2 22.4 1.0
C05 A:ZH4401 4.2 30.4 1.0
OE2 A:GLU78 4.2 35.9 1.0
CB A:THR191 4.3 30.0 1.0
HD23 A:LEU241 4.3 30.4 1.0
HB3 A:ASP242 4.4 35.7 1.0
HB2 A:ASP242 4.4 35.7 1.0
HA A:ASP242 4.4 35.4 1.0
CG A:GLU78 4.5 18.8 1.0
HA A:THR191 4.5 23.6 1.0
CE1 A:HIS265 4.7 24.6 1.0
CA A:ASP242 4.7 29.6 1.0
O A:HIS238 4.7 29.9 1.0
NE2 A:HIS265 4.7 24.8 1.0
HD1 A:HIS238 4.8 29.0 1.0
N06 A:ZH4401 4.8 29.7 1.0
CD A:GLU78 4.8 36.9 1.0
O27 A:ZH4401 4.9 38.8 1.0
C26 A:ZH4401 4.9 32.6 1.0
H A:ASP242 4.9 24.8 1.0
CA A:THR191 5.0 19.8 1.0
HD1 A:HIS79 5.0 32.7 1.0

Reference:

X.Liang, C.J.Lee, X.Chen, H.S.Chung, D.Zeng, C.R.Raetz, Y.Li, P.Zhou, E.J.Toone. Syntheses, Structures and Antibiotic Activities of Lpxc Inhibitors Based on the Diacetylene Scaffold. Bioorg.Med.Chem. V. 19 852 2011.
ISSN: ISSN 0968-0896
PubMed: 21194954
DOI: 10.1016/J.BMC.2010.12.017
Page generated: Wed Dec 16 04:43:46 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy