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Zinc in PDB 3oj7: Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Sulfate

Protein crystallography data

The structure of Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Sulfate, PDB code: 3oj7 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.37 / 1.40
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 52.890, 61.030, 67.310, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 18.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Sulfate (pdb code 3oj7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Sulfate, PDB code: 3oj7:

Zinc binding site 1 out of 1 in 3oj7

Go back to Zinc Binding Sites List in 3oj7
Zinc binding site 1 out of 1 in the Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Sulfate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Histidine Triad Family Protein From Entamoeba Histolytica, Bound to Sulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn114

b:20.2
occ:1.00
ND1 A:HIS47 2.0 19.4 1.0
ND1 A:HIS97 2.0 13.9 1.0
SG A:CYS8 2.3 22.4 1.0
SG A:CYS5 2.3 21.1 1.0
CE1 A:HIS47 2.8 22.8 1.0
CE1 A:HIS97 2.9 16.3 1.0
CG A:HIS97 3.1 16.0 1.0
CG A:HIS47 3.2 20.9 1.0
CB A:CYS5 3.3 23.5 1.0
CB A:CYS8 3.4 21.3 1.0
CB A:HIS97 3.5 17.3 1.0
N A:CYS8 3.5 19.7 1.0
CB A:HIS47 3.7 20.6 1.0
CA A:CYS8 3.9 21.0 1.0
NE2 A:HIS47 4.0 24.5 1.0
NE2 A:HIS97 4.1 16.5 1.0
CD2 A:HIS97 4.2 16.9 1.0
CD2 A:HIS47 4.2 25.2 1.0
CA A:HIS47 4.2 21.2 1.0
C A:PHE7 4.4 18.3 1.0
CA A:HIS97 4.7 18.1 1.0
CA A:CYS5 4.7 25.7 1.0
CB A:PHE7 4.8 19.4 1.0
O A:CYS5 4.9 24.2 1.0
CA A:PHE7 4.9 19.5 1.0
C A:CYS5 5.0 23.3 1.0

Reference:

D.D.Lorimer, R.Choi, A.Abramov, S.Nakazawa Hewitt, A.S.Gardberg, W.C.Van Voorhis, B.L.Staker, P.J.Myler, T.E.Edwards. Structures of A Histidine Triad Family Protein From Entamoeba Histolytica Bound to Sulfate, Amp and Gmp. Acta Crystallogr F Struct V. 71 572 2015BIOL Commun.
PubMed: 25945711
DOI: 10.1107/S2053230X1500237X
Page generated: Sat Oct 26 10:57:45 2024

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