Zinc binding site 1 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Cys21, A: Lys23, A: Cys24, A: His53, A: Cys56, A: Hoh208, |
conact list:
Atom | Atom | Distance (A) | Zn | CB A:Cys21 | 3.01 | Zn | SG A:Cys21 | 2.27 | Zn | CA A:Cys21 | 4.48 | Zn | CB A:Lys23 | 4.71 | Zn | C A:Lys23 | 4.99 | Zn | N A:Cys24 | 3.91 | Zn | CB A:Cys24 | 3.53 | Zn | SG A:Cys24 | 2.31 | Zn | C A:Cys24 | 4.98 | Zn | CA A:Cys24 | 4.29 | Zn | NE2 A:His53 | 4.19 | Zn | N A:His53 | 3.97 | Zn | CB A:His53 | 3.50 | Zn | ND1 A:His53 | 2.12 | Zn | CD2 A:His53 | 4.26 | Zn | CE1 A:His53 | 3.05 | Zn | CG A:His53 | 3.15 | Zn | CA A:His53 | 4.37 | Zn | N A:Cys56 | 5.00 | Zn | CB A:Cys56 | 3.13 | Zn | SG A:Cys56 | 2.28 | Zn | CA A:Cys56 | 4.58 | Zn | O A:Hoh208 | 4.89 |
| interactive model:
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Zinc binding site 2 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Cys21, B: Lys23, B: Cys24, B: Ser25, B: His53, B: Cys56, B: Hoh297, |
conact list:
Atom | Atom | Distance (A) | Zn | CB B:Cys21 | 3.04 | Zn | SG B:Cys21 | 2.29 | Zn | CA B:Cys21 | 4.52 | Zn | CB B:Lys23 | 4.88 | Zn | C B:Lys23 | 4.87 | Zn | N B:Cys24 | 3.72 | Zn | CB B:Cys24 | 3.22 | Zn | SG B:Cys24 | 2.19 | Zn | C B:Cys24 | 4.82 | Zn | CA B:Cys24 | 4.03 | Zn | N B:Ser25 | 4.88 | Zn | NE2 B:His53 | 4.19 | Zn | N B:His53 | 4.13 | Zn | CB B:His53 | 3.65 | Zn | ND1 B:His53 | 2.16 | Zn | CD2 B:His53 | 4.32 | Zn | CE1 B:His53 | 3.02 | Zn | CG B:His53 | 3.24 | Zn | CA B:His53 | 4.52 | Zn | CB B:Cys56 | 3.20 | Zn | SG B:Cys56 | 2.22 | Zn | CA B:Cys56 | 4.63 | Zn | O B:Hoh297 | 4.01 |
| interactive model:
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Zinc binding site 3 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Cys21, C: Lys23, C: Cys24, C: Ser25, C: His53, C: Cys56, C: Hoh105, |
conact list:
Atom | Atom | Distance (A) | Zn | CB C:Cys21 | 3.06 | Zn | SG C:Cys21 | 2.33 | Zn | CA C:Cys21 | 4.54 | Zn | CB C:Lys23 | 4.75 | Zn | C C:Lys23 | 4.89 | Zn | N C:Cys24 | 3.77 | Zn | CB C:Cys24 | 3.28 | Zn | SG C:Cys24 | 2.32 | Zn | C C:Cys24 | 4.83 | Zn | CA C:Cys24 | 4.09 | Zn | N C:Ser25 | 4.91 | Zn | NE2 C:His53 | 4.16 | Zn | N C:His53 | 4.13 | Zn | CB C:His53 | 3.61 | Zn | ND1 C:His53 | 2.12 | Zn | CD2 C:His53 | 4.28 | Zn | CE1 C:His53 | 2.99 | Zn | CG C:His53 | 3.20 | Zn | CA C:His53 | 4.51 | Zn | CB C:Cys56 | 3.22 | Zn | SG C:Cys56 | 2.21 | Zn | CA C:Cys56 | 4.66 | Zn | O C:Hoh105 | 4.48 |
| interactive model:
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Zinc binding site 4 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Cys21, D: Lys23, D: Cys24, D: Ser25, D: His53, D: Cys56, |
conact list:
Atom | Atom | Distance (A) | Zn | CB D:Cys21 | 3.12 | Zn | SG D:Cys21 | 2.27 | Zn | CA D:Cys21 | 4.60 | Zn | CB D:Lys23 | 4.85 | Zn | C D:Lys23 | 4.98 | Zn | N D:Cys24 | 3.83 | Zn | CB D:Cys24 | 3.28 | Zn | SG D:Cys24 | 2.22 | Zn | C D:Cys24 | 4.87 | Zn | CA D:Cys24 | 4.12 | Zn | N D:Ser25 | 4.99 | Zn | NE2 D:His53 | 4.29 | Zn | N D:His53 | 4.13 | Zn | CB D:His53 | 3.46 | Zn | ND1 D:His53 | 2.20 | Zn | CD2 D:His53 | 4.32 | Zn | CE1 D:His53 | 3.17 | Zn | CG D:His53 | 3.18 | Zn | CA D:His53 | 4.44 | Zn | CB D:Cys56 | 3.24 | Zn | SG D:Cys56 | 2.23 | Zn | CA D:Cys56 | 4.63 |
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Zinc binding site 5 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Cys21, E: Lys23, E: Cys24, E: Ser25, E: His53, E: Cys56, E: Hoh100, |
conact list:
Atom | Atom | Distance (A) | Zn | CB E:Cys21 | 3.05 | Zn | SG E:Cys21 | 2.28 | Zn | CA E:Cys21 | 4.51 | Zn | CB E:Lys23 | 4.86 | Zn | C E:Lys23 | 4.95 | Zn | N E:Cys24 | 3.82 | Zn | CB E:Cys24 | 3.38 | Zn | SG E:Cys24 | 2.24 | Zn | C E:Cys24 | 4.81 | Zn | CA E:Cys24 | 4.12 | Zn | N E:Ser25 | 4.93 | Zn | NE2 E:His53 | 4.34 | Zn | N E:His53 | 4.03 | Zn | CB E:His53 | 3.59 | Zn | ND1 E:His53 | 2.27 | Zn | CD2 E:His53 | 4.40 | Zn | CE1 E:His53 | 3.20 | Zn | CG E:His53 | 3.28 | Zn | CA E:His53 | 4.44 | Zn | CB E:Cys56 | 3.16 | Zn | SG E:Cys56 | 2.30 | Zn | CA E:Cys56 | 4.60 | Zn | O E:Hoh100 | 4.47 |
| interactive model:
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Zinc binding site 6 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: F: Cys21, F: Lys23, F: Cys24, F: His53, F: Cys56, G: Hoh121, |
conact list:
Atom | Atom | Distance (A) | Zn | CB F:Cys21 | 3.09 | Zn | SG F:Cys21 | 2.29 | Zn | CA F:Cys21 | 4.58 | Zn | CB F:Lys23 | 4.91 | Zn | CG F:Lys23 | 4.72 | Zn | N F:Cys24 | 3.91 | Zn | CB F:Cys24 | 3.34 | Zn | SG F:Cys24 | 2.32 | Zn | C F:Cys24 | 4.94 | Zn | CA F:Cys24 | 4.19 | Zn | NE2 F:His53 | 4.26 | Zn | N F:His53 | 4.06 | Zn | CB F:His53 | 3.54 | Zn | ND1 F:His53 | 2.19 | Zn | CD2 F:His53 | 4.33 | Zn | CE1 F:His53 | 3.12 | Zn | CG F:His53 | 3.21 | Zn | CA F:His53 | 4.42 | Zn | CB F:Cys56 | 3.22 | Zn | SG F:Cys56 | 2.28 | Zn | CA F:Cys56 | 4.67 | Zn | O G:Hoh121 | 4.35 |
| interactive model:
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Zinc binding site 7 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: G: Cys21, G: Lys23, G: Cys24, G: Ser25, G: His53, G: Cys56, G: Hoh132, |
conact list:
Atom | Atom | Distance (A) | Zn | CB G:Cys21 | 2.99 | Zn | SG G:Cys21 | 2.31 | Zn | CA G:Cys21 | 4.47 | Zn | CB G:Lys23 | 4.87 | Zn | C G:Lys23 | 4.95 | Zn | N G:Cys24 | 3.84 | Zn | CB G:Cys24 | 3.38 | Zn | SG G:Cys24 | 2.27 | Zn | C G:Cys24 | 4.78 | Zn | CA G:Cys24 | 4.14 | Zn | N G:Ser25 | 4.94 | Zn | NE2 G:His53 | 4.14 | Zn | N G:His53 | 4.03 | Zn | CB G:His53 | 3.58 | Zn | ND1 G:His53 | 2.09 | Zn | CD2 G:His53 | 4.26 | Zn | CE1 G:His53 | 2.97 | Zn | CG G:His53 | 3.18 | Zn | CA G:His53 | 4.43 | Zn | CB G:Cys56 | 3.18 | Zn | SG G:Cys56 | 2.26 | Zn | CA G:Cys56 | 4.64 | Zn | O G:Hoh132 | 4.63 |
| interactive model:
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Zinc binding site 8 out of 8 in 3od8
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 Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Zinc in the PDB 3od8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Cys21, H: Lys23, H: Cys24, H: His53, H: Cys56, |
conact list:
Atom | Atom | Distance (A) | Zn | CB H:Cys21 | 3.04 | Zn | SG H:Cys21 | 2.28 | Zn | CA H:Cys21 | 4.51 | Zn | CB H:Lys23 | 4.61 | Zn | CG H:Lys23 | 4.70 | Zn | N H:Cys24 | 3.91 | Zn | CB H:Cys24 | 3.35 | Zn | SG H:Cys24 | 2.30 | Zn | C H:Cys24 | 4.93 | Zn | CA H:Cys24 | 4.20 | Zn | NE2 H:His53 | 4.03 | Zn | N H:His53 | 4.01 | Zn | CB H:His53 | 3.59 | Zn | ND1 H:His53 | 2.03 | Zn | CD2 H:His53 | 4.18 | Zn | CE1 H:His53 | 2.87 | Zn | CG H:His53 | 3.13 | Zn | CA H:His53 | 4.43 | Zn | CB H:Cys56 | 3.19 | Zn | SG H:Cys56 | 2.25 | Zn | CA H:Cys56 | 4.65 |
| interactive model:
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