Atomistry » Zinc » PDB 3mpv-3n2v » 3mwm
Atomistry »
  Zinc »
    PDB 3mpv-3n2v »
      3mwm »

Zinc in PDB 3mwm: Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur

Protein crystallography data

The structure of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur, PDB code: 3mwm was solved by H.J.Jung, Y.J.An, S.-S.Cha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.02 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.599, 36.978, 71.645, 90.00, 103.26, 90.00
R / Rfree (%) 20.6 / 24.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur (pdb code 3mwm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur, PDB code: 3mwm:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 3mwm

Go back to Zinc Binding Sites List in 3mwm
Zinc binding site 1 out of 6 in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn140

b:41.3
occ:1.00
SG A:CYS93 2.3 17.3 1.0
SG A:CYS130 2.3 18.8 1.0
SG A:CYS133 2.3 22.9 1.0
SG A:CYS90 2.3 17.2 1.0
CB A:CYS93 3.1 14.4 1.0
CB A:CYS90 3.3 15.4 1.0
CB A:CYS133 3.4 26.1 1.0
N A:CYS93 3.5 17.8 1.0
CB A:CYS130 3.6 16.1 1.0
CA A:CYS93 3.9 16.6 1.0
N A:CYS133 4.2 27.0 1.0
N A:CYS130 4.2 12.9 1.0
CB A:ALA92 4.3 17.6 1.0
CA A:CYS133 4.4 26.6 1.0
CA A:CYS130 4.4 15.5 1.0
C A:ALA92 4.5 19.3 1.0
CB A:LYS95 4.6 12.5 1.0
CE A:LYS95 4.7 17.1 1.0
NZ A:LYS95 4.7 21.0 1.0
CA A:CYS90 4.7 17.1 1.0
O A:CYS130 4.7 17.9 1.0
C A:CYS93 4.7 15.4 1.0
N A:GLY94 4.8 15.1 1.0
CA A:ALA92 4.8 19.7 1.0
C A:CYS130 4.9 17.4 1.0
N A:ALA92 5.0 19.2 1.0
N A:LYS95 5.0 11.9 1.0

Zinc binding site 2 out of 6 in 3mwm

Go back to Zinc Binding Sites List in 3mwm
Zinc binding site 2 out of 6 in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn141

b:35.1
occ:1.00
OD2 A:ASP65 1.9 21.0 1.0
NE2 A:HIS87 2.0 3.6 1.0
NE2 A:HIS85 2.0 8.8 1.0
SG A:CYS79 2.2 24.0 1.0
CD2 A:HIS87 2.8 3.8 1.0
CD2 A:HIS85 2.9 8.0 1.0
CG A:ASP65 2.9 20.1 1.0
CE1 A:HIS85 3.0 7.2 1.0
CE1 A:HIS87 3.0 2.6 1.0
CB A:CYS79 3.2 21.3 1.0
CB A:ASP65 3.4 17.0 1.0
OD1 A:ASP65 4.0 21.1 1.0
CG A:HIS87 4.0 3.7 1.0
ND1 A:HIS85 4.0 9.2 1.0
CG A:HIS85 4.0 8.3 1.0
ND1 A:HIS87 4.1 3.4 1.0
CG A:GLU98 4.4 15.3 1.0
CA A:CYS79 4.6 21.2 1.0
CA A:ASP65 4.9 17.2 1.0
OE2 A:GLU98 4.9 18.6 1.0
CD A:GLU98 5.0 17.9 1.0
NE A:ARG77 5.0 16.1 1.0

Zinc binding site 3 out of 6 in 3mwm

Go back to Zinc Binding Sites List in 3mwm
Zinc binding site 3 out of 6 in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn142

b:41.7
occ:1.00
OE2 A:GLU105 1.6 24.7 1.0
NE2 A:HIS84 2.0 16.3 1.0
NE2 A:HIS122 2.0 14.2 1.0
NE2 A:HIS86 2.0 12.4 1.0
CD A:GLU105 2.7 24.2 1.0
CD2 A:HIS84 2.9 15.9 1.0
CE1 A:HIS122 2.9 17.5 1.0
CE1 A:HIS86 2.9 11.1 1.0
CE1 A:HIS84 3.0 16.2 1.0
CD2 A:HIS86 3.1 8.6 1.0
CD2 A:HIS122 3.1 16.3 1.0
OE1 A:GLU105 3.2 27.2 1.0
CG A:GLU105 3.9 24.1 1.0
CG A:HIS84 4.0 15.5 1.0
ND1 A:HIS84 4.0 15.6 1.0
ND1 A:HIS122 4.1 16.6 1.0
ND1 A:HIS86 4.1 12.8 1.0
CG A:HIS86 4.2 10.1 1.0
CG A:HIS122 4.2 15.8 1.0
O A:HOH174 4.6 31.8 1.0
O A:HOH161 4.8 17.0 1.0

Zinc binding site 4 out of 6 in 3mwm

Go back to Zinc Binding Sites List in 3mwm
Zinc binding site 4 out of 6 in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn140

b:36.0
occ:1.00
NE2 B:HIS87 1.8 8.2 1.0
NE2 B:HIS85 2.0 15.2 1.0
OD2 B:ASP65 2.1 15.2 1.0
SG B:CYS79 2.2 18.4 1.0
CD2 B:HIS87 2.7 11.1 1.0
CE1 B:HIS87 2.9 8.8 1.0
CD2 B:HIS85 2.9 13.7 1.0
CE1 B:HIS85 3.0 14.3 1.0
CG B:ASP65 3.1 15.2 1.0
CB B:CYS79 3.2 19.3 1.0
CB B:ASP65 3.6 12.9 1.0
CG B:HIS87 3.8 10.2 1.0
ND1 B:HIS87 3.9 10.0 1.0
CG B:HIS85 4.0 14.0 1.0
ND1 B:HIS85 4.1 13.4 1.0
OD1 B:ASP65 4.2 14.8 1.0
CG B:GLU98 4.4 14.9 1.0
CA B:CYS79 4.6 20.0 1.0
NH2 B:ARG77 4.9 21.9 1.0
CZ B:PHE29 5.0 6.7 1.0

Zinc binding site 5 out of 6 in 3mwm

Go back to Zinc Binding Sites List in 3mwm
Zinc binding site 5 out of 6 in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn141

b:52.2
occ:1.00
SG B:CYS133 2.2 33.8 1.0
SG B:CYS93 2.3 19.8 1.0
SG B:CYS130 2.4 23.5 1.0
SG B:CYS90 2.6 10.1 1.0
CB B:CYS93 3.2 17.1 1.0
CB B:CYS90 3.3 11.2 1.0
CB B:CYS133 3.4 34.5 1.0
N B:CYS93 3.7 18.6 1.0
CB B:CYS130 3.8 20.6 1.0
CA B:CYS93 4.0 17.4 1.0
N B:CYS130 4.3 16.7 1.0
CB B:LYS95 4.4 16.7 1.0
N B:CYS133 4.5 33.8 1.0
CB B:ALA92 4.5 19.8 1.0
CA B:CYS133 4.5 35.0 1.0
C B:ALA92 4.6 20.1 1.0
CA B:CYS130 4.6 19.6 1.0
C B:CYS93 4.8 16.6 1.0
CA B:CYS90 4.8 12.0 1.0
N B:LYS95 4.9 15.1 1.0
CA B:ALA92 4.9 20.6 1.0
N B:GLY94 5.0 16.0 1.0

Zinc binding site 6 out of 6 in 3mwm

Go back to Zinc Binding Sites List in 3mwm
Zinc binding site 6 out of 6 in the Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn142

b:40.0
occ:1.00
NE2 B:HIS84 1.8 12.4 1.0
OE1 B:GLU105 1.8 9.4 1.0
NE2 B:HIS86 2.1 10.5 1.0
NE2 B:HIS122 2.1 18.6 1.0
CD B:GLU105 2.5 13.9 1.0
OE2 B:GLU105 2.7 11.9 1.0
CD2 B:HIS84 2.8 11.4 1.0
CE1 B:HIS84 2.8 8.2 1.0
CE1 B:HIS122 3.0 19.6 1.0
CE1 B:HIS86 3.0 9.5 1.0
CD2 B:HIS86 3.2 8.1 1.0
CD2 B:HIS122 3.2 19.2 1.0
ND1 B:HIS84 3.9 10.5 1.0
CG B:HIS84 3.9 11.7 1.0
CG B:GLU105 4.0 14.4 1.0
ND1 B:HIS122 4.2 19.3 1.0
ND1 B:HIS86 4.2 11.1 1.0
CG B:HIS86 4.3 10.3 1.0
CG B:HIS122 4.3 18.1 1.0

Reference:

J.-H.Shin, H.J.Jung, Y.J.An, Y.-B.Cho, S.-S.Cha, J.-H.Roe. Graded Expression of Zinc-Responsive Genes Through Two Regulatory Zinc-Binding Sites in Zur Proc.Natl.Acad.Sci.Usa V. 108 5045 2011.
ISSN: ISSN 0027-8424
PubMed: 21383173
DOI: 10.1073/PNAS.1017744108
Page generated: Wed Dec 16 04:36:12 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy