Zinc in PDB 3km2: As-Isolated Tomato Chloroplast Superoxide Dismutase
Enzymatic activity of As-Isolated Tomato Chloroplast Superoxide Dismutase
All present enzymatic activity of As-Isolated Tomato Chloroplast Superoxide Dismutase:
1.15.1.1;
Protein crystallography data
The structure of As-Isolated Tomato Chloroplast Superoxide Dismutase, PDB code: 3km2
was solved by
A.Galaleldeen,
A.B.Taylor,
P.J.Hart,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
48.98 /
3.10
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
142.033,
144.523,
192.178,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
22 /
25.2
|
Zinc Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
24;
Binding sites:
The binding sites of Zinc atom in the As-Isolated Tomato Chloroplast Superoxide Dismutase
(pdb code 3km2). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 24 binding sites of Zinc where determined in the
As-Isolated Tomato Chloroplast Superoxide Dismutase, PDB code: 3km2:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Zinc binding site 1 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 1 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn155
b:32.8
occ:1.00
|
OD1
|
A:ASP83
|
2.1
|
61.0
|
1.0
|
|
ND1
|
A:HIS71
|
2.2
|
65.3
|
1.0
|
|
ND1
|
A:HIS63
|
2.2
|
47.3
|
1.0
|
|
ND1
|
A:HIS80
|
2.2
|
56.0
|
1.0
|
|
CG
|
A:ASP83
|
2.9
|
58.5
|
1.0
|
|
CE1
|
A:HIS71
|
3.0
|
63.8
|
1.0
|
|
OD2
|
A:ASP83
|
3.0
|
63.1
|
1.0
|
|
CE1
|
A:HIS80
|
3.1
|
61.4
|
1.0
|
|
CE1
|
A:HIS63
|
3.1
|
55.9
|
1.0
|
|
CG
|
A:HIS63
|
3.1
|
47.8
|
1.0
|
|
CG
|
A:HIS80
|
3.3
|
51.8
|
1.0
|
|
CG
|
A:HIS71
|
3.3
|
64.2
|
1.0
|
|
CB
|
A:HIS63
|
3.4
|
50.8
|
1.0
|
|
CB
|
A:HIS80
|
3.6
|
49.0
|
1.0
|
|
CB
|
A:HIS71
|
3.7
|
66.7
|
1.0
|
|
O
|
A:THR136
|
3.8
|
61.0
|
1.0
|
|
CA
|
A:HIS71
|
4.0
|
63.1
|
1.0
|
|
NE2
|
A:HIS71
|
4.1
|
63.8
|
1.0
|
|
NE2
|
A:HIS80
|
4.2
|
55.8
|
1.0
|
|
NE2
|
A:HIS63
|
4.2
|
56.4
|
1.0
|
|
CB
|
A:ASP83
|
4.3
|
54.8
|
1.0
|
|
CD2
|
A:HIS63
|
4.3
|
52.6
|
1.0
|
|
CD2
|
A:HIS71
|
4.3
|
67.7
|
1.0
|
|
CD2
|
A:HIS80
|
4.3
|
56.3
|
1.0
|
|
CA
|
A:ASP83
|
4.7
|
53.9
|
1.0
|
|
N
|
A:HIS80
|
4.8
|
54.8
|
1.0
|
|
N
|
A:GLY72
|
4.8
|
59.4
|
1.0
|
|
CA
|
A:HIS80
|
4.8
|
50.6
|
1.0
|
|
N
|
A:HIS71
|
4.9
|
66.3
|
1.0
|
|
C
|
A:THR136
|
4.9
|
59.2
|
1.0
|
|
C
|
A:HIS71
|
4.9
|
60.2
|
1.0
|
|
N
|
A:ASP83
|
4.9
|
58.6
|
1.0
|
|
CA
|
A:HIS63
|
5.0
|
45.3
|
1.0
|
|
Zinc binding site 2 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 2 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Zn155
b:31.9
occ:1.00
|
OD1
|
B:ASP83
|
2.0
|
58.5
|
1.0
|
|
ND1
|
B:HIS71
|
2.2
|
64.5
|
1.0
|
|
ND1
|
B:HIS80
|
2.2
|
58.1
|
1.0
|
|
ND1
|
B:HIS63
|
2.2
|
46.6
|
1.0
|
|
CG
|
B:ASP83
|
2.8
|
59.6
|
1.0
|
|
OD2
|
B:ASP83
|
2.9
|
56.5
|
1.0
|
|
CE1
|
B:HIS71
|
3.0
|
65.8
|
1.0
|
|
CE1
|
B:HIS80
|
3.1
|
57.0
|
1.0
|
|
CG
|
B:HIS80
|
3.2
|
51.0
|
1.0
|
|
CG
|
B:HIS63
|
3.2
|
47.3
|
1.0
|
|
CE1
|
B:HIS63
|
3.2
|
55.5
|
1.0
|
|
CG
|
B:HIS71
|
3.3
|
67.2
|
1.0
|
|
CB
|
B:HIS63
|
3.4
|
44.6
|
1.0
|
|
CB
|
B:HIS80
|
3.5
|
50.7
|
1.0
|
|
CB
|
B:HIS71
|
3.8
|
70.2
|
1.0
|
|
O
|
B:THR136
|
3.9
|
59.9
|
1.0
|
|
CA
|
B:HIS71
|
4.0
|
63.8
|
1.0
|
|
CB
|
B:ASP83
|
4.2
|
61.6
|
1.0
|
|
NE2
|
B:HIS71
|
4.2
|
58.2
|
1.0
|
|
NE2
|
B:HIS80
|
4.2
|
57.6
|
1.0
|
|
CD2
|
B:HIS80
|
4.3
|
56.3
|
1.0
|
|
NE2
|
B:HIS63
|
4.3
|
54.4
|
1.0
|
|
CD2
|
B:HIS63
|
4.3
|
55.5
|
1.0
|
|
CD2
|
B:HIS71
|
4.3
|
70.9
|
1.0
|
|
CA
|
B:ASP83
|
4.6
|
55.5
|
1.0
|
|
N
|
B:HIS80
|
4.7
|
55.1
|
1.0
|
|
CA
|
B:HIS80
|
4.7
|
51.3
|
1.0
|
|
N
|
B:GLY72
|
4.8
|
65.0
|
1.0
|
|
N
|
B:ASP83
|
4.8
|
54.1
|
1.0
|
|
N
|
B:HIS71
|
4.9
|
64.2
|
1.0
|
|
C
|
B:THR136
|
4.9
|
58.7
|
1.0
|
|
C
|
B:HIS71
|
5.0
|
61.1
|
1.0
|
|
CA
|
B:HIS63
|
5.0
|
40.7
|
1.0
|
|
Zinc binding site 3 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 3 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn155
b:36.6
occ:1.00
|
OD1
|
C:ASP83
|
2.0
|
54.9
|
1.0
|
|
ND1
|
C:HIS71
|
2.1
|
67.0
|
1.0
|
|
ND1
|
C:HIS63
|
2.2
|
48.8
|
1.0
|
|
ND1
|
C:HIS80
|
2.3
|
58.1
|
1.0
|
|
CG
|
C:ASP83
|
2.8
|
53.8
|
1.0
|
|
CE1
|
C:HIS71
|
2.9
|
58.3
|
1.0
|
|
OD2
|
C:ASP83
|
2.9
|
61.9
|
1.0
|
|
CE1
|
C:HIS63
|
3.1
|
53.7
|
1.0
|
|
CE1
|
C:HIS80
|
3.2
|
60.4
|
1.0
|
|
CG
|
C:HIS71
|
3.2
|
68.0
|
1.0
|
|
CG
|
C:HIS63
|
3.2
|
45.6
|
1.0
|
|
CG
|
C:HIS80
|
3.3
|
53.8
|
1.0
|
|
CB
|
C:HIS63
|
3.6
|
42.8
|
1.0
|
|
CB
|
C:HIS80
|
3.6
|
49.9
|
1.0
|
|
CB
|
C:HIS71
|
3.7
|
66.2
|
1.0
|
|
CA
|
C:HIS71
|
3.9
|
60.1
|
1.0
|
|
O
|
C:THR136
|
3.9
|
51.5
|
1.0
|
|
NE2
|
C:HIS71
|
4.1
|
56.8
|
1.0
|
|
CB
|
C:ASP83
|
4.2
|
57.0
|
1.0
|
|
CD2
|
C:HIS71
|
4.2
|
62.6
|
1.0
|
|
NE2
|
C:HIS63
|
4.3
|
58.3
|
1.0
|
|
NE2
|
C:HIS80
|
4.3
|
59.8
|
1.0
|
|
CD2
|
C:HIS63
|
4.3
|
53.5
|
1.0
|
|
CD2
|
C:HIS80
|
4.4
|
60.8
|
1.0
|
|
CA
|
C:ASP83
|
4.6
|
54.9
|
1.0
|
|
N
|
C:GLY72
|
4.7
|
63.5
|
1.0
|
|
N
|
C:HIS80
|
4.7
|
51.3
|
1.0
|
|
CA
|
C:HIS80
|
4.8
|
49.3
|
1.0
|
|
N
|
C:HIS71
|
4.9
|
65.6
|
1.0
|
|
N
|
C:ASP83
|
4.9
|
60.3
|
1.0
|
|
C
|
C:HIS71
|
4.9
|
61.9
|
1.0
|
|
C
|
C:THR136
|
4.9
|
57.0
|
1.0
|
|
CD2
|
C:HIS46
|
5.0
|
46.0
|
1.0
|
|
Zinc binding site 4 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 4 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Zn155
b:88.9
occ:1.00
|
OD1
|
D:ASP83
|
2.1
|
54.9
|
1.0
|
|
ND1
|
D:HIS80
|
2.2
|
45.9
|
1.0
|
|
ND1
|
D:HIS71
|
2.2
|
60.8
|
1.0
|
|
ND1
|
D:HIS63
|
2.2
|
46.1
|
1.0
|
|
CG
|
D:ASP83
|
2.9
|
54.9
|
1.0
|
|
CE1
|
D:HIS71
|
3.0
|
61.0
|
1.0
|
|
OD2
|
D:ASP83
|
3.0
|
57.9
|
1.0
|
|
CE1
|
D:HIS80
|
3.0
|
57.2
|
1.0
|
|
CG
|
D:HIS80
|
3.2
|
48.6
|
1.0
|
|
CG
|
D:HIS63
|
3.2
|
46.7
|
1.0
|
|
CE1
|
D:HIS63
|
3.2
|
53.0
|
1.0
|
|
CG
|
D:HIS71
|
3.3
|
59.8
|
1.0
|
|
CB
|
D:HIS63
|
3.5
|
45.8
|
1.0
|
|
CB
|
D:HIS80
|
3.6
|
54.7
|
1.0
|
|
CB
|
D:HIS71
|
3.7
|
68.6
|
1.0
|
|
CA
|
D:HIS71
|
3.9
|
59.3
|
1.0
|
|
NE2
|
D:HIS80
|
4.2
|
55.8
|
1.0
|
|
NE2
|
D:HIS71
|
4.2
|
62.0
|
1.0
|
|
CB
|
D:ASP83
|
4.3
|
61.5
|
1.0
|
|
CD2
|
D:HIS80
|
4.3
|
60.0
|
1.0
|
|
CD2
|
D:HIS71
|
4.3
|
63.7
|
1.0
|
|
NE2
|
D:HIS63
|
4.3
|
52.8
|
1.0
|
|
CD2
|
D:HIS63
|
4.4
|
53.1
|
1.0
|
|
CA
|
D:ASP83
|
4.7
|
58.7
|
1.0
|
|
N
|
D:HIS80
|
4.7
|
56.0
|
1.0
|
|
N
|
D:GLY72
|
4.7
|
59.1
|
1.0
|
|
CA
|
D:HIS80
|
4.8
|
53.6
|
1.0
|
|
N
|
D:HIS71
|
4.8
|
66.3
|
1.0
|
|
C
|
D:HIS71
|
4.9
|
64.8
|
1.0
|
|
N
|
D:ASP83
|
4.9
|
60.6
|
1.0
|
|
CA
|
D:HIS63
|
5.0
|
43.2
|
1.0
|
|
O
|
D:THR137
|
5.0
|
65.8
|
1.0
|
|
Zinc binding site 5 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 5 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Zn155
b:30.3
occ:1.00
|
OD1
|
E:ASP83
|
2.1
|
56.8
|
1.0
|
|
ND1
|
E:HIS80
|
2.1
|
52.5
|
1.0
|
|
ND1
|
E:HIS63
|
2.1
|
39.3
|
1.0
|
|
ND1
|
E:HIS71
|
2.3
|
62.8
|
1.0
|
|
CG
|
E:ASP83
|
2.9
|
56.8
|
1.0
|
|
CE1
|
E:HIS80
|
3.0
|
54.9
|
1.0
|
|
CG
|
E:HIS63
|
3.0
|
53.0
|
1.0
|
|
OD2
|
E:ASP83
|
3.0
|
57.0
|
1.0
|
|
CG
|
E:HIS80
|
3.1
|
54.6
|
1.0
|
|
CE1
|
E:HIS71
|
3.1
|
65.5
|
1.0
|
|
CE1
|
E:HIS63
|
3.1
|
50.9
|
1.0
|
|
CB
|
E:HIS63
|
3.3
|
52.8
|
1.0
|
|
CG
|
E:HIS71
|
3.4
|
54.3
|
1.0
|
|
CB
|
E:HIS80
|
3.5
|
50.0
|
1.0
|
|
O
|
E:THR136
|
3.8
|
52.7
|
1.0
|
|
CB
|
E:HIS71
|
3.8
|
60.1
|
1.0
|
|
CA
|
E:HIS71
|
4.0
|
61.3
|
1.0
|
|
NE2
|
E:HIS80
|
4.1
|
48.0
|
1.0
|
|
CD2
|
E:HIS63
|
4.2
|
58.2
|
1.0
|
|
CD2
|
E:HIS80
|
4.2
|
57.3
|
1.0
|
|
NE2
|
E:HIS63
|
4.2
|
56.2
|
1.0
|
|
CB
|
E:ASP83
|
4.3
|
57.8
|
1.0
|
|
NE2
|
E:HIS71
|
4.3
|
64.5
|
1.0
|
|
CD2
|
E:HIS71
|
4.5
|
66.0
|
1.0
|
|
CA
|
E:HIS80
|
4.7
|
50.2
|
1.0
|
|
N
|
E:HIS80
|
4.7
|
54.3
|
1.0
|
|
CA
|
E:ASP83
|
4.7
|
52.6
|
1.0
|
|
CA
|
E:HIS63
|
4.8
|
42.5
|
1.0
|
|
C
|
E:THR136
|
4.9
|
54.2
|
1.0
|
|
N
|
E:GLY72
|
4.9
|
62.6
|
1.0
|
|
N
|
E:ASP83
|
4.9
|
52.0
|
1.0
|
|
N
|
E:HIS71
|
4.9
|
69.7
|
1.0
|
|
Zinc binding site 6 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 6 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 6 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Zn155
b:34.8
occ:1.00
|
OD1
|
F:ASP83
|
2.0
|
56.9
|
1.0
|
|
ND1
|
F:HIS80
|
2.1
|
52.9
|
1.0
|
|
ND1
|
F:HIS63
|
2.2
|
49.9
|
1.0
|
|
ND1
|
F:HIS71
|
2.3
|
69.2
|
1.0
|
|
CG
|
F:ASP83
|
2.9
|
55.0
|
1.0
|
|
CE1
|
F:HIS80
|
3.0
|
58.3
|
1.0
|
|
OD2
|
F:ASP83
|
3.1
|
54.9
|
1.0
|
|
CG
|
F:HIS80
|
3.1
|
53.1
|
1.0
|
|
CG
|
F:HIS63
|
3.1
|
52.0
|
1.0
|
|
CE1
|
F:HIS71
|
3.1
|
67.7
|
1.0
|
|
CE1
|
F:HIS63
|
3.2
|
53.6
|
1.0
|
|
CB
|
F:HIS63
|
3.3
|
46.3
|
1.0
|
|
CG
|
F:HIS71
|
3.4
|
61.5
|
1.0
|
|
CB
|
F:HIS80
|
3.4
|
51.3
|
1.0
|
|
CB
|
F:HIS71
|
3.8
|
65.4
|
1.0
|
|
O
|
F:THR136
|
3.9
|
56.2
|
1.0
|
|
CA
|
F:HIS71
|
4.0
|
61.4
|
1.0
|
|
NE2
|
F:HIS80
|
4.1
|
56.9
|
1.0
|
|
CD2
|
F:HIS80
|
4.2
|
61.8
|
1.0
|
|
CB
|
F:ASP83
|
4.2
|
60.1
|
1.0
|
|
CD2
|
F:HIS63
|
4.3
|
55.4
|
1.0
|
|
NE2
|
F:HIS63
|
4.3
|
51.7
|
1.0
|
|
NE2
|
F:HIS71
|
4.3
|
60.7
|
1.0
|
|
CD2
|
F:HIS71
|
4.5
|
64.8
|
1.0
|
|
CA
|
F:ASP83
|
4.7
|
56.2
|
1.0
|
|
CA
|
F:HIS80
|
4.7
|
49.4
|
1.0
|
|
N
|
F:HIS80
|
4.7
|
56.0
|
1.0
|
|
N
|
F:ASP83
|
4.8
|
57.1
|
1.0
|
|
CA
|
F:HIS63
|
4.8
|
45.7
|
1.0
|
|
N
|
F:GLY72
|
4.9
|
67.2
|
1.0
|
|
C
|
F:THR136
|
4.9
|
57.6
|
1.0
|
|
N
|
F:HIS71
|
4.9
|
62.7
|
1.0
|
|
Zinc binding site 7 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 7 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 7 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn155
b:66.9
occ:1.00
|
ND1
|
G:HIS80
|
2.0
|
52.8
|
1.0
|
|
OD1
|
G:ASP83
|
2.1
|
53.0
|
1.0
|
|
ND1
|
G:HIS71
|
2.3
|
64.8
|
1.0
|
|
ND1
|
G:HIS63
|
2.4
|
47.7
|
1.0
|
|
CG
|
G:ASP83
|
2.9
|
54.7
|
1.0
|
|
CE1
|
G:HIS80
|
2.9
|
56.1
|
1.0
|
|
CG
|
G:HIS80
|
3.0
|
49.3
|
1.0
|
|
OD2
|
G:ASP83
|
3.0
|
53.1
|
1.0
|
|
CE1
|
G:HIS71
|
3.1
|
68.3
|
1.0
|
|
CG
|
G:HIS63
|
3.3
|
48.8
|
1.0
|
|
CG
|
G:HIS71
|
3.4
|
59.2
|
1.0
|
|
CB
|
G:HIS80
|
3.4
|
53.5
|
1.0
|
|
CE1
|
G:HIS63
|
3.4
|
53.5
|
1.0
|
|
CB
|
G:HIS63
|
3.4
|
47.6
|
1.0
|
|
CB
|
G:HIS71
|
3.7
|
65.1
|
1.0
|
|
O
|
G:THR136
|
3.8
|
64.2
|
1.0
|
|
CA
|
G:HIS71
|
3.9
|
60.1
|
1.0
|
|
NE2
|
G:HIS80
|
4.0
|
61.3
|
1.0
|
|
CD2
|
G:HIS80
|
4.1
|
51.6
|
1.0
|
|
CB
|
G:ASP83
|
4.3
|
62.7
|
1.0
|
|
NE2
|
G:HIS71
|
4.3
|
66.0
|
1.0
|
|
CD2
|
G:HIS71
|
4.4
|
68.8
|
1.0
|
|
CD2
|
G:HIS63
|
4.5
|
56.1
|
1.0
|
|
NE2
|
G:HIS63
|
4.5
|
55.8
|
1.0
|
|
N
|
G:HIS80
|
4.6
|
68.5
|
1.0
|
|
CA
|
G:HIS80
|
4.6
|
56.0
|
1.0
|
|
N
|
G:GLY72
|
4.7
|
65.6
|
1.0
|
|
N
|
G:HIS71
|
4.8
|
65.2
|
1.0
|
|
CA
|
G:ASP83
|
4.8
|
58.9
|
1.0
|
|
C
|
G:HIS71
|
4.9
|
62.8
|
1.0
|
|
C
|
G:THR136
|
4.9
|
65.3
|
1.0
|
|
CA
|
G:HIS63
|
5.0
|
47.6
|
1.0
|
|
N
|
G:ASP83
|
5.0
|
60.9
|
1.0
|
|
Zinc binding site 8 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 8 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 8 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Zn155
b:33.5
occ:1.00
|
OD1
|
H:ASP83
|
2.1
|
58.9
|
1.0
|
|
ND1
|
H:HIS80
|
2.1
|
51.9
|
1.0
|
|
ND1
|
H:HIS71
|
2.3
|
62.2
|
1.0
|
|
ND1
|
H:HIS63
|
2.3
|
47.7
|
1.0
|
|
CG
|
H:ASP83
|
2.8
|
54.9
|
1.0
|
|
OD2
|
H:ASP83
|
2.9
|
56.7
|
1.0
|
|
CE1
|
H:HIS80
|
3.0
|
50.1
|
1.0
|
|
CG
|
H:HIS80
|
3.1
|
54.5
|
1.0
|
|
CE1
|
H:HIS71
|
3.1
|
70.2
|
1.0
|
|
CG
|
H:HIS63
|
3.2
|
47.1
|
1.0
|
|
CE1
|
H:HIS63
|
3.3
|
52.4
|
1.0
|
|
CG
|
H:HIS71
|
3.4
|
64.5
|
1.0
|
|
CB
|
H:HIS63
|
3.4
|
40.6
|
1.0
|
|
CB
|
H:HIS80
|
3.4
|
54.4
|
1.0
|
|
CB
|
H:HIS71
|
3.7
|
70.4
|
1.0
|
|
CA
|
H:HIS71
|
3.9
|
59.9
|
1.0
|
|
O
|
H:THR136
|
4.0
|
56.7
|
1.0
|
|
NE2
|
H:HIS80
|
4.1
|
55.1
|
1.0
|
|
CD2
|
H:HIS80
|
4.1
|
53.5
|
1.0
|
|
CB
|
H:ASP83
|
4.2
|
58.1
|
1.0
|
|
NE2
|
H:HIS71
|
4.3
|
61.8
|
1.0
|
|
CD2
|
H:HIS63
|
4.4
|
53.7
|
1.0
|
|
NE2
|
H:HIS63
|
4.4
|
54.1
|
1.0
|
|
CD2
|
H:HIS71
|
4.4
|
63.8
|
1.0
|
|
N
|
H:HIS80
|
4.6
|
56.6
|
1.0
|
|
CA
|
H:HIS80
|
4.6
|
55.8
|
1.0
|
|
CA
|
H:ASP83
|
4.7
|
57.6
|
1.0
|
|
N
|
H:GLY72
|
4.7
|
66.3
|
1.0
|
|
N
|
H:ASP83
|
4.8
|
57.4
|
1.0
|
|
N
|
H:HIS71
|
4.8
|
59.3
|
1.0
|
|
C
|
H:HIS71
|
4.9
|
64.8
|
1.0
|
|
CA
|
H:HIS63
|
4.9
|
45.0
|
1.0
|
|
C
|
H:THR136
|
5.0
|
53.2
|
1.0
|
|
Zinc binding site 9 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 9 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 9 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Zn155
b:58.3
occ:1.00
|
OD1
|
I:ASP83
|
2.1
|
46.5
|
1.0
|
|
ND1
|
I:HIS71
|
2.1
|
58.8
|
1.0
|
|
ND1
|
I:HIS63
|
2.2
|
42.9
|
1.0
|
|
ND1
|
I:HIS80
|
2.3
|
40.9
|
1.0
|
|
CG
|
I:ASP83
|
2.8
|
51.0
|
1.0
|
|
CE1
|
I:HIS71
|
2.9
|
67.9
|
1.0
|
|
OD2
|
I:ASP83
|
3.0
|
56.0
|
1.0
|
|
CE1
|
I:HIS80
|
3.1
|
50.7
|
1.0
|
|
CE1
|
I:HIS63
|
3.2
|
51.2
|
1.0
|
|
CG
|
I:HIS63
|
3.2
|
41.5
|
1.0
|
|
CG
|
I:HIS80
|
3.3
|
46.4
|
1.0
|
|
CG
|
I:HIS71
|
3.3
|
56.0
|
1.0
|
|
CB
|
I:HIS63
|
3.6
|
45.7
|
1.0
|
|
CB
|
I:HIS80
|
3.6
|
51.1
|
1.0
|
|
CB
|
I:HIS71
|
3.7
|
68.1
|
1.0
|
|
O
|
I:THR136
|
3.9
|
66.2
|
1.0
|
|
CA
|
I:HIS71
|
4.0
|
66.3
|
1.0
|
|
NE2
|
I:HIS71
|
4.1
|
61.1
|
1.0
|
|
CB
|
I:ASP83
|
4.2
|
56.7
|
1.0
|
|
NE2
|
I:HIS80
|
4.2
|
58.5
|
1.0
|
|
NE2
|
I:HIS63
|
4.3
|
57.3
|
1.0
|
|
CD2
|
I:HIS71
|
4.3
|
60.3
|
1.0
|
|
CD2
|
I:HIS80
|
4.3
|
55.7
|
1.0
|
|
CD2
|
I:HIS63
|
4.3
|
56.2
|
1.0
|
|
CA
|
I:ASP83
|
4.7
|
61.1
|
1.0
|
|
N
|
I:HIS80
|
4.7
|
61.4
|
1.0
|
|
N
|
I:GLY72
|
4.8
|
64.7
|
1.0
|
|
CA
|
I:HIS80
|
4.8
|
57.2
|
1.0
|
|
N
|
I:ASP83
|
4.8
|
55.5
|
1.0
|
|
N
|
I:HIS71
|
4.9
|
66.1
|
1.0
|
|
C
|
I:HIS71
|
5.0
|
62.2
|
1.0
|
|
C
|
I:THR136
|
5.0
|
61.2
|
1.0
|
|
Zinc binding site 10 out
of 24 in 3km2
Go back to
Zinc Binding Sites List in 3km2
Zinc binding site 10 out
of 24 in the As-Isolated Tomato Chloroplast Superoxide Dismutase
 Mono view
 Stereo pair view
|
|
A full contact list of Zinc with other atoms in the Zn binding
site number 10 of As-Isolated Tomato Chloroplast Superoxide Dismutase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn155
b:79.2
occ:1.00
|
OD1
|
J:ASP83
|
2.0
|
53.4
|
1.0
|
|
ND1
|
J:HIS80
|
2.1
|
48.4
|
1.0
|
|
ND1
|
J:HIS63
|
2.2
|
45.4
|
1.0
|
|
ND1
|
J:HIS71
|
2.3
|
54.6
|
1.0
|
|
CG
|
J:ASP83
|
2.9
|
51.8
|
1.0
|
|
CE1
|
J:HIS80
|
3.0
|
53.1
|
1.0
|
|
OD2
|
J:ASP83
|
3.1
|
49.6
|
1.0
|
|
CG
|
J:HIS63
|
3.1
|
44.6
|
1.0
|
|
CE1
|
J:HIS71
|
3.1
|
54.6
|
1.0
|
|
CG
|
J:HIS80
|
3.1
|
53.6
|
1.0
|
|
CE1
|
J:HIS63
|
3.2
|
46.6
|
1.0
|
|
CB
|
J:HIS63
|
3.3
|
40.6
|
1.0
|
|
CG
|
J:HIS71
|
3.4
|
57.3
|
1.0
|
|
CB
|
J:HIS80
|
3.5
|
56.7
|
1.0
|
|
CB
|
J:HIS71
|
3.8
|
71.6
|
1.0
|
|
CA
|
J:HIS71
|
4.0
|
66.1
|
1.0
|
|
NE2
|
J:HIS80
|
4.1
|
53.2
|
1.0
|
|
CD2
|
J:HIS80
|
4.2
|
56.7
|
1.0
|
|
CD2
|
J:HIS63
|
4.3
|
57.5
|
1.0
|
|
CB
|
J:ASP83
|
4.3
|
61.6
|
1.0
|
|
NE2
|
J:HIS63
|
4.3
|
55.2
|
1.0
|
|
NE2
|
J:HIS71
|
4.3
|
53.7
|
1.0
|
|
CD2
|
J:HIS71
|
4.5
|
63.5
|
1.0
|
|
N
|
J:HIS80
|
4.7
|
58.6
|
1.0
|
|
CA
|
J:HIS80
|
4.7
|
49.2
|
1.0
|
|
CA
|
J:ASP83
|
4.7
|
55.6
|
1.0
|
|
N
|
J:GLY72
|
4.8
|
59.9
|
1.0
|
|
CA
|
J:HIS63
|
4.8
|
45.4
|
1.0
|
|
N
|
J:ASP83
|
4.9
|
50.5
|
1.0
|
|
N
|
J:HIS71
|
4.9
|
65.7
|
1.0
|
|
C
|
J:HIS71
|
5.0
|
67.3
|
1.0
|
|
Reference:
A.Galaleldeen,
A.B.Taylor,
P.J.Hart.
Biophysical Properties of Tomato Chloroplast Sod To Be Published.
Page generated: Sat Oct 26 07:53:43 2024
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