Zinc in PDB 3kl7: Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution

The structure of Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution, PDB code: 3kl7 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.54 / 2.30
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	95.034, 95.034, 63.295, 90.00, 90.00, 120.00
R / Rfree (%)	16.4 / 20.4

The binding sites of Zinc atom in the Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution (pdb code 3kl7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution, PDB code: 3kl7:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:32.1 occ:1.00 O A:HOH679 2.0 37.9 1.0 NE2 A:HIS146 2.1 20.5 1.0 NE2 A:HIS79 2.3 18.3 1.0 OD2 A:ASP168 2.3 20.5 1.0 ND1 A:HIS81 2.3 16.6 1.0 O1 A:UNL301 2.4 11.0 1.0 CE1 A:HIS146 3.1 19.6 1.0 ZN A:ZN303 3.1 29.2 1.0 CD2 A:HIS146 3.1 20.5 1.0 CD2 A:HIS79 3.2 18.7 1.0 CE1 A:HIS81 3.2 16.4 1.0 CE1 A:HIS79 3.3 19.8 1.0 CG A:ASP168 3.3 18.4 1.0 CG A:HIS81 3.4 16.1 1.0 CB A:ASP168 3.7 16.7 1.0 CB A:HIS81 3.7 16.2 1.0 O2 A:UNL301 3.8 29.6 1.0 O3 A:UNL301 3.9 20.1 1.0 CD2 A:HIS84 4.1 18.1 1.0 NE2 A:HIS84 4.1 18.5 1.0 ND1 A:HIS146 4.2 19.1 1.0 CG A:HIS146 4.3 19.8 1.0 CG A:HIS79 4.4 17.8 1.0 NE2 A:HIS81 4.4 15.3 1.0 ND1 A:HIS79 4.4 18.9 1.0 OD1 A:ASP168 4.5 19.9 1.0 CD2 A:HIS81 4.5 16.4 1.0 OD1 A:ASP83 4.5 16.5 1.0 OD2 A:ASP83 5.0 16.6 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Putative Metal-Dependent Hydrolase (YP_001302908.1) From Parabacteroides Distasonis Atcc 8503 at 2.30 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:29.2 occ:1.00 O A:HOH679 2.1 37.9 1.0 OD2 A:ASP168 2.1 20.5 1.0 NE2 A:HIS215 2.2 14.7 1.0 NE2 A:HIS84 2.3 18.5 1.0 OD2 A:ASP83 2.5 16.6 1.0 O3 A:UNL301 2.6 20.1 1.0 CD2 A:HIS84 2.9 18.1 1.0 CE1 A:HIS215 3.0 15.9 1.0 CG A:ASP168 3.1 18.4 1.0 ZN A:ZN302 3.1 32.1 1.0 CD2 A:HIS215 3.2 16.0 1.0 CG A:ASP83 3.3 15.9 1.0 O1 A:UNL301 3.3 11.0 1.0 OD1 A:ASP168 3.4 19.9 1.0 OD1 A:ASP83 3.4 16.5 1.0 CE1 A:HIS84 3.5 18.6 1.0 O2 A:UNL301 4.0 29.6 1.0 NE2 A:HIS43 4.0 8.6 1.0 O4 A:UNL301 4.1 13.8 1.0 ND1 A:HIS215 4.1 16.5 1.0 NE2 A:HIS79 4.2 18.3 1.0 CG A:HIS84 4.2 17.5 1.0 CG A:HIS215 4.3 15.4 1.0 CE1 A:HIS79 4.3 19.8 1.0 ND1 A:HIS84 4.4 17.8 1.0 CB A:ASP168 4.5 16.7 1.0 CD2 A:HIS43 4.6 11.2 1.0 CB A:ASP83 4.7 16.6 1.0 NE2 A:HIS146 4.8 20.5 1.0 O A:HOH311 4.9 11.0 1.0 CE1 A:HIS43 5.0 9.7 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.