Zinc in PDB 3khi: Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution

The structure of Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution, PDB code: 3khi was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.37 / 1.95
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	131.190, 131.190, 37.120, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 21.3

The structure of Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution (pdb code 3khi). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution, PDB code: 3khi:

Zinc binding site 1 out of 1 in the Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Metal-Dependent Hydrolase (YP_001336084.1) From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 at 1.95 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:23.1 occ:1.00 NE2 A:HIS112 1.9 45.3 1.0 OE1 A:GLU212 1.9 22.8 1.0 NE2 A:HIS149 1.9 19.4 1.0 NE2 A:HIS153 2.0 20.9 1.0 CD A:GLU212 2.8 26.5 1.0 CD2 A:HIS112 2.9 54.8 1.0 OE2 A:GLU212 2.9 30.9 1.0 CE1 A:HIS112 2.9 42.6 1.0 CE1 A:HIS149 2.9 24.5 1.0 CE1 A:HIS153 3.0 27.6 1.0 CD2 A:HIS149 3.0 22.2 1.0 CD2 A:HIS153 3.1 24.3 1.0 CG2 A:VAL116 4.0 42.5 1.0 ND1 A:HIS112 4.0 55.9 1.0 ND1 A:HIS149 4.0 20.4 1.0 CG A:HIS112 4.0 55.1 1.0 CG A:HIS149 4.1 20.8 1.0 ND1 A:HIS153 4.1 22.8 1.0 CG A:HIS153 4.2 23.2 1.0 CG A:GLU212 4.2 25.2 1.0 CE2 A:TYR205 4.4 42.2 1.0 CB A:ALA215 4.4 16.7 1.0 OE2 A:GLU150 4.5 30.1 1.0 CA A:GLU212 4.8 22.6 1.0 OH A:TYR205 4.8 37.0 1.0 CB A:GLU212 4.9 21.9 1.0

Q.Xu, A.K.Gohler, A.Kosfeld, D.Carlton, H.J.Chiu, H.E.Klock, M.W.Knuth, M.D.Miller, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, K.Jahreis, I.A.Wilson. The Structure of Mlc Titration Factor A (Mtfa/Yeei) Reveals A Prototypical Zinc Metallopeptidase Related to Anthrax Lethal Factor. J.Bacteriol. V. 194 2987 2012.
ISSN: ISSN 0021-9193
PubMed: 22467785
DOI: 10.1128/JB.00038-12