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Zinc in PDB 3dti: Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae

Protein crystallography data

The structure of Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae, PDB code: 3dti was solved by A.Vujicic-Zagar, R.Dulermo, M.Le Gorrec, F.Vannier, P.Servant, S.Sommer, A.De Groot, L.Serre, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.50
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.190, 53.410, 63.420, 90.00, 90.00, 90.00
R / Rfree (%) 24.1 / 31.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae (pdb code 3dti). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae, PDB code: 3dti:

Zinc binding site 1 out of 1 in 3dti

Go back to Zinc Binding Sites List in 3dti
Zinc binding site 1 out of 1 in the Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn282

b:63.7
occ:1.00
OE1 A:GLU113 2.0 68.3 1.0
NE2 A:HIS82 2.1 59.0 1.0
NE2 A:HIS86 2.1 64.0 1.0
CD A:GLU113 2.7 70.5 1.0
OE2 A:GLU113 2.7 71.0 1.0
CD2 A:HIS86 2.9 63.9 1.0
CD2 A:HIS82 2.9 58.3 1.0
OE2 A:GLU83 3.1 62.5 1.0
CE1 A:HIS82 3.2 58.2 1.0
CE1 A:HIS86 3.2 64.1 1.0
CD A:GLU83 4.0 61.4 1.0
CG A:HIS86 4.1 63.7 1.0
CG A:HIS82 4.1 58.3 1.0
CG A:GLU113 4.1 71.0 1.0
ND1 A:HIS82 4.2 58.1 1.0
ND1 A:HIS86 4.2 63.9 1.0
OE1 A:GLU83 4.2 61.8 1.0
CB A:CYS116 4.8 65.0 1.0
SG A:CYS116 4.8 66.0 1.0
CB A:GLU113 4.8 71.8 1.0

Reference:

A.Vujicic-Zagar, R.Dulermo, M.Le Gorrec, F.Vannier, P.Servant, S.Sommer, A.De Groot, L.Serre. Crystal Structure of the Irre Protein, A Central Regulator of Dna Damage Repair in Deinococcaceae J.Mol.Biol. V. 386 704 2009.
ISSN: ISSN 0022-2836
PubMed: 19150362
DOI: 10.1016/J.JMB.2008.12.062
Page generated: Sat Sep 26 06:03:50 2020
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