Atomistry » Zinc » PDB 2zep-2zxg » 2ztg
Atomistry »
  Zinc »
    PDB 2zep-2zxg »
      2ztg »

Zinc in PDB 2ztg: Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa

Enzymatic activity of Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa

All present enzymatic activity of Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa:
6.1.1.7;

Protein crystallography data

The structure of Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa, PDB code: 2ztg was solved by M.Naganuma, S.Sekine, R.Fukunaga, S.Yokoyama, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.74 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 160.391, 49.082, 98.044, 90.00, 108.08, 90.00
R / Rfree (%) 21.5 / 26.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa (pdb code 2ztg). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa, PDB code: 2ztg:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2ztg

Go back to Zinc Binding Sites List in 2ztg
Zinc binding site 1 out of 2 in the Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn901

b:59.9
occ:1.00
 O A:HOH1146 1.7 42.4 1.0
O A:HOH1144 1.9 66.2 1.0
NE2 A:HIS452 2.1 55.0 1.0
O A:HOH1055 2.4 50.6 1.0
O A:HOH1129 2.7 42.5 1.0
O A:HOH1054 2.7 55.1 1.0
CE1 A:HIS452 2.8 54.9 1.0
CD2 A:HIS452 3.3 52.7 1.0
OE2 A:GLU447 4.0 65.0 1.0
ND1 A:HIS452 4.0 56.0 1.0
OE1 A:GLU447 4.2 65.1 1.0
CG A:HIS452 4.2 54.5 1.0
O A:HOH1145 4.5 65.7 1.0
CD A:GLU447 4.5 62.9 1.0
CD1 A:LEU429 4.7 58.2 1.0
CD2 A:LEU429 4.8 58.2 1.0

Zinc binding site 2 out of 2 in 2ztg

Go back to Zinc Binding Sites List in 2ztg
Zinc binding site 2 out of 2 in the Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking the C-Terminal Dimerization Domain in Complex with Ala-Sa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn902

b:70.3
occ:1.00
 NE2 A:HIS707 2.0 51.8 1.0
SG A:CYS703 2.1 52.2 1.0
NE2 A:HIS604 2.4 44.3 1.0
NE2 A:HIS600 2.4 46.4 1.0
CE1 A:HIS707 2.5 51.1 1.0
O A:HOH1114 2.5 36.8 1.0
CE1 A:HIS600 3.1 58.8 1.0
CE1 A:HIS604 3.1 41.1 1.0
CD2 A:HIS600 3.2 48.0 1.0
CB A:CYS703 3.3 43.5 1.0
CD2 A:HIS707 3.3 42.0 1.0
CD2 A:HIS604 3.4 42.5 1.0
ND1 A:HIS707 3.7 49.5 1.0
ND1 A:HIS600 3.9 58.5 1.0
CG A:HIS600 4.0 53.1 1.0
CG A:HIS707 4.1 47.9 1.0
ND1 A:HIS604 4.2 48.5 1.0
CG A:HIS604 4.3 41.7 1.0
CA A:CYS703 4.7 44.3 1.0
N A:GLY705 4.7 49.8 1.0
CG2 A:VAL694 4.8 41.3 1.0
CG1 A:VAL694 4.8 44.3 1.0
CA A:GLY705 4.9 50.8 1.0
O A:HIS600 4.9 44.3 1.0
CB A:VAL694 4.9 45.2 1.0

Reference:

M.Naganuma, S.Sekine, R.Fukunaga, S.Yokoyama. Unique Protein Architecture of Alanyl-Trna Synthetase For Aminoacylation, Editing, and Dimerization. Proc.Natl.Acad.Sci.Usa V. 106 8489 2009.
ISSN: ISSN 0027-8424
PubMed: 19423669
DOI: 10.1073/PNAS.0901572106
Page generated: Thu Oct 24 10:53:17 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy