Zinc in PDB 2zp9: The Nature of the Trap:Anti-Trap Complex

The structure of The Nature of the Trap:Anti-Trap Complex, PDB code: 2zp9 was solved by M.Watanabe, J.G.Heddle, S.Unzai, S.Akashi, S.Y.Park, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 3.20
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	197.134, 197.135, 56.658, 90.00, 90.00, 120.00
R / Rfree (%)	30.3 / 32.5

The binding sites of Zinc atom in the The Nature of the Trap:Anti-Trap Complex (pdb code 2zp9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the The Nature of the Trap:Anti-Trap Complex, PDB code: 2zp9:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn54 b:0.5 occ:1.00 SG C:CYS12 1.8 85.8 1.0 SG C:CYS26 2.3 86.1 1.0 SG C:CYS15 2.7 86.0 1.0 SG C:CYS29 2.8 85.1 1.0 CB C:CYS12 3.0 85.6 1.0 CB C:CYS29 3.3 85.6 1.0 N C:CYS29 3.4 85.7 1.0 CB C:CYS26 3.5 85.9 1.0 CB C:ALA28 3.7 85.6 1.0 N C:CYS15 3.7 85.6 1.0 CB C:CYS15 3.7 85.6 1.0 CB C:LYS14 4.0 85.7 1.0 CA C:CYS29 4.0 85.7 1.0 C C:ALA28 4.1 85.6 1.0 CA C:ALA28 4.3 85.6 1.0 CA C:CYS12 4.3 85.5 1.0 CA C:CYS15 4.3 85.6 1.0 N C:ALA28 4.4 85.6 1.0 C C:LYS14 4.6 85.7 1.0 N C:LYS14 4.6 85.7 1.0 CA C:LYS14 4.6 85.7 1.0 C C:CYS12 4.7 85.5 1.0 CA C:CYS26 4.8 85.8 1.0 C C:CYS26 4.9 85.8 1.0 CD1 C:ILE35 4.9 85.4 1.0 O C:CYS12 4.9 85.5 1.0 CG C:LYS14 5.0 85.9 1.0 O C:CYS26 5.0 85.7 1.0

Zinc binding site 2 out of 5 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn54 b:0.3 occ:1.00 SG D:CYS12 2.0 85.3 1.0 SG D:CYS15 2.1 85.2 1.0 SG D:CYS26 2.3 85.7 1.0 CB D:CYS12 2.8 85.4 1.0 SG D:CYS29 2.8 85.8 1.0 CB D:CYS15 3.2 85.5 1.0 CB D:CYS26 3.3 85.8 1.0 N D:CYS15 3.4 85.7 1.0 CB D:CYS29 3.5 85.8 1.0 CA D:CYS15 3.8 85.5 1.0 N D:CYS29 4.0 85.7 1.0 CA D:CYS12 4.2 85.5 1.0 CB D:LYS14 4.3 85.6 1.0 CA D:CYS29 4.4 85.7 1.0 CB D:ALA28 4.5 85.6 1.0 C D:LYS14 4.5 85.7 1.0 O D:CYS12 4.5 85.5 1.0 C D:CYS15 4.5 85.4 1.0 C D:CYS12 4.6 85.5 1.0 O D:CYS15 4.7 85.4 1.0 CA D:LYS14 4.7 85.7 1.0 N D:LYS14 4.8 85.7 1.0 CA D:CYS26 4.8 85.8 1.0 C D:ALA28 4.8 85.6 0.0

Zinc binding site 3 out of 5 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn54 b:70.5 occ:1.00 SG E:CYS12 2.2 85.3 1.0 SG E:CYS26 2.3 85.3 1.0 SG E:CYS29 2.3 84.4 1.0 SG E:CYS15 2.5 85.5 1.0 CB E:CYS29 2.6 85.4 1.0 CB E:CYS12 3.1 85.5 1.0 N E:CYS29 3.3 85.7 1.0 CB E:CYS26 3.4 85.6 1.0 CA E:CYS29 3.5 85.6 1.0 CB E:CYS15 3.9 85.4 1.0 C E:ALA28 4.2 85.6 1.0 N E:CYS15 4.3 85.7 1.0 CB E:ALA28 4.3 85.4 1.0 CA E:GLY33 4.5 83.2 1.0 C E:CYS29 4.5 85.7 1.0 CA E:CYS12 4.6 85.5 1.0 CA E:ALA28 4.7 85.5 1.0 N E:GLY33 4.7 83.4 1.0 CA E:CYS15 4.7 85.4 1.0 CA E:CYS26 4.7 85.7 1.0 O E:CYS26 4.7 85.7 1.0 CA E:GLY19 4.8 77.3 1.0 N E:ALA28 4.8 85.6 1.0 C E:CYS26 4.8 85.7 1.0 N E:SER30 4.9 85.8 1.0 CB E:LYS14 5.0 85.8 1.0

Zinc binding site 4 out of 5 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn54 b:0.7 occ:1.00 SG I:CYS15 1.5 85.2 1.0 SG I:CYS29 2.4 85.3 1.0 SG I:CYS12 2.5 85.2 1.0 CB I:CYS12 2.9 85.6 1.0 CB I:CYS15 3.1 85.5 1.0 SG I:CYS26 3.2 86.2 1.0 CB I:CYS29 3.3 85.7 1.0 CB I:CYS26 3.6 86.0 1.0 N I:CYS15 3.9 85.7 1.0 CA I:CYS15 3.9 85.5 1.0 CA I:GLY33 4.2 85.9 1.0 C I:CYS15 4.3 85.4 1.0 CA I:CYS12 4.3 85.5 1.0 O I:CYS15 4.3 85.5 1.0 C I:GLY33 4.4 85.8 1.0 N I:CYS29 4.4 85.7 1.0 N I:GLY33 4.4 86.0 1.0 CA I:CYS29 4.5 85.7 1.0 O I:GLY33 4.5 85.6 1.0 O I:CYS12 4.7 85.5 1.0 C I:CYS12 4.8 85.5 1.0 N I:VAL34 5.0 86.0 1.0

Zinc binding site 5 out of 5 in the The Nature of the Trap:Anti-Trap Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Nature of the Trap:Anti-Trap Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn54 b:0.2 occ:1.00 SG J:CYS29 2.1 85.0 1.0 SG J:CYS15 2.2 86.0 1.0 SG J:CYS12 2.4 85.5 1.0 SG J:CYS26 2.5 85.8 1.0 CB J:CYS26 3.1 85.8 1.0 CB J:CYS29 3.1 85.8 1.0 CB J:CYS12 3.5 85.5 1.0 CB J:CYS15 3.5 85.5 1.0 N J:CYS29 3.7 85.7 1.0 N J:CYS15 3.9 85.7 1.0 CA J:CYS29 4.0 85.7 1.0 CA J:CYS15 4.3 85.6 1.0 CB J:ALA28 4.5 85.5 1.0 CA J:CYS26 4.5 85.8 1.0 C J:ALA28 4.6 85.6 1.0 CA J:GLY33 4.6 86.6 1.0 N J:GLY33 4.7 86.3 1.0 O J:CYS26 4.8 85.7 1.0 C J:CYS26 4.8 85.7 1.0 CB J:LYS14 4.8 85.7 1.0 CA J:ALA28 4.9 85.6 1.0 C J:CYS29 4.9 85.7 1.0 N J:ALA28 4.9 85.6 1.0 CA J:CYS12 4.9 85.5 1.0 C J:CYS15 4.9 85.5 1.0 C J:LYS14 5.0 85.7 1.0

M.Watanabe, J.G.Heddle, K.Kikuchi, S.Unzai, S.Akashi, S.Y.Park, J.R.Tame. The Nature of the Trap-Anti-Trap Complex. Proc.Natl.Acad.Sci.Usa V. 106 2176 2009.
ISSN: ISSN 0027-8424
PubMed: 19164760
DOI: 10.1073/PNAS.0801032106