Atomistry » Zinc » PDB 2vh5-2vqw » 2vn3
Atomistry »
  Zinc »
    PDB 2vh5-2vqw »
      2vn3 »

Zinc in PDB 2vn3: Nitrite Reductase From Alcaligenes Xylosoxidans

Protein crystallography data

The structure of Nitrite Reductase From Alcaligenes Xylosoxidans, PDB code: 2vn3 was solved by K.Sato, S.J.Firbank, C.Li, M.J.Banfield, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.14 / 2.35
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 89.451, 89.451, 144.473, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 21.5

Other elements in 2vn3:

The structure of Nitrite Reductase From Alcaligenes Xylosoxidans also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Nitrite Reductase From Alcaligenes Xylosoxidans (pdb code 2vn3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Nitrite Reductase From Alcaligenes Xylosoxidans, PDB code: 2vn3:

Zinc binding site 1 out of 1 in 2vn3

Go back to Zinc Binding Sites List in 2vn3
Zinc binding site 1 out of 1 in the Nitrite Reductase From Alcaligenes Xylosoxidans


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Nitrite Reductase From Alcaligenes Xylosoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:50.0
occ:1.00
O A:HOH2161 1.7 35.5 1.0
NE2 A:HIS165 2.0 30.2 1.0
OD2 A:ASP167 2.5 42.9 1.0
OD1 A:ASP167 2.7 42.3 1.0
CD2 A:HIS165 2.8 29.8 1.0
CG A:ASP167 3.0 40.8 1.0
CE1 A:HIS165 3.1 30.6 1.0
OG1 A:THR234 4.0 41.5 1.0
CG A:HIS165 4.0 29.2 1.0
ND1 A:HIS165 4.1 29.6 1.0
CB A:THR234 4.3 42.7 1.0
CB A:ASP167 4.5 40.0 1.0
N A:THR234 4.5 43.0 1.0
O A:GLY232 4.7 42.7 1.0
N A:ASP167 4.9 37.4 1.0

Reference:

K.Sato, S.J.Firbank, C.Li, M.J.Banfield, C.Dennison. The Importance of the Long Type 1 Copper-Binding Loop of Nitrite Reductase For Structure and Function. Chemistry V. 14 5820 2008.
ISSN: ISSN 0947-6539
PubMed: 18491346
DOI: 10.1002/CHEM.200701997
Page generated: Wed Dec 16 03:55:28 2020

Last articles

Ca in 6AQ5
Ca in 6APG
Ca in 6AON
Ca in 6AL6
Ca in 6AJC
Ca in 6ANJ
Ca in 6AM3
Ca in 6AMZ
Ca in 6AMF
Ca in 6AK9
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy