Zinc in PDB 2vh3: Ranasmurfin

The structure of Ranasmurfin, PDB code: 2vh3 was solved by M.Oke, R.T.Ching, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, C.Bloch Junior, C.H.Botting, M.A.Walsh, A.A.Latiff, M.W.Kennedy, A.Cooper, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.81 / 1.16
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.990, 59.670, 44.900, 90.00, 93.31, 90.00
R / Rfree (%)	21.4 / 23.6

The binding sites of Zinc atom in the Ranasmurfin (pdb code 2vh3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Ranasmurfin, PDB code: 2vh3:

Zinc binding site 1 out of 1 in the Ranasmurfin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ranasmurfin within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1113 b:16.3 occ:0.70 NE2 A:TY2108 2.0 17.4 1.0 OH A:TY2108 2.0 17.7 1.0 OH B:TYR108 2.1 17.6 1.0 NE2 B:HIS112 2.1 15.5 1.0 NE2 A:HIS112 2.1 21.9 1.0 CE2 A:TY2108 2.8 13.7 1.0 CE2 B:TYR108 2.8 12.8 1.0 CZ A:TY2108 2.8 15.7 1.0 CZ B:TYR108 2.8 13.9 1.0 CE1 B:HIS112 3.0 15.1 1.0 CD2 A:HIS112 3.0 23.6 1.0 CE1 A:HIS112 3.1 23.3 1.0 CD2 B:HIS112 3.1 17.8 1.0 CD2 B:TYR108 4.1 14.8 1.0 ND1 B:HIS112 4.1 17.0 1.0 CD2 A:TY2108 4.1 14.1 1.0 ND1 A:HIS112 4.2 24.1 1.0 CE1 A:TY2108 4.2 16.5 1.0 CG A:HIS112 4.2 23.8 1.0 CG B:HIS112 4.2 16.6 1.0 CE1 B:TYR108 4.2 13.2 1.0 O A:HOH2098 4.3 38.5 1.0 O A:HOH2094 4.3 34.1 1.0 O B:HOH2070 4.4 28.2 1.0 O B:HOH2069 4.7 34.9 1.0 CG2 B:ILE110 4.9 19.4 1.0

M.Oke, R.T.Ching, L.G.Carter, K.A.Johnson, H.Liu, S.A.Mcmahon, M.F.White, C.Bloch Jr, C.H.Botting, M.A.Walsh, A.A.Latiff, M.W.Kennedy, A.Cooper, J.H.Naismith. Unusual Chromophore and Cross-Links in Ranasmurfin: A Blue Protein From the Foam Nests of A Tropical Frog. Angew.Chem.Int.Ed.Engl. V. 47 7853 2008.
ISSN: ISSN 1433-7851
PubMed: 18781570
DOI: 10.1002/ANIE.200802901