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    PDB 1nyr-1os4
    PDB 1os9-1p9w
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    PDB 1r79-1ro9
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    PDB 1umt-1v67
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    PDB 1xq0-1y5w
    PDB 1y5x-1ylk
    PDB 1ylo-1z8r
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    PDB 1zl6-258l
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    PDB 2bg2-2c3a
    PDB 2c4r-2cij
    PDB 2cim-2czr
    PDB 2d0w-2djw
    PDB 2dkc-2e1b
    PDB 2e1s-2eer
    PDB 2eex-2em4
    PDB 2em5-2eoj
    PDB 2eok-2erq
    PDB 2esf-2fa7
    PDB 2fac-2fpx
    PDB 2fqp-2g84
    PDB 2g87-2gvf
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    PDB 2hap-2huc
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    PDB 2imr-2j65
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    PDB 2kft-2l75
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    PDB 2oso-2p53
    PDB 2p57-2pow
    PDB 2ppb-2q8j
    PDB 2qa1-2qp6
      2qa1
      2qaj
      2qam
      2qao
      2qba
      2qbc
      2qbe
      2qbg
      2qbi
      2qbk
      2qds
      2qdt
      2qee
      2qf7
      2qfa
      2qfb
      2qfi
      2qfp
      2qfr
      2qg9
      2qgf
      2qgp
      2qgs
      2qh0
      2qha
      2qic
      2qii
      2qin
      2qiu
      2qje
      2qjs
      2qkd
      2ql0
      2ql1
      2qla
      2qm1
      2qmu
      2qmy
      2qmz
      2qn0
      2qnc
      2qnf
      2qnw
      2qo8
      2qoa
      2qov
      2qox
      2qoz
      2qp1
      2qp6
    PDB 2qpj-2r71
    PDB 2r74-2sod
    PDB 2srt-2v86
    PDB 2v87-2vp7
    PDB 2vpb-2vyo
    PDB 2vz5-2wey
    PDB 2wfq-2wx0
    PDB 2wx1-2xam
    PDB 2xan-2xr9
    PDB 2xrg-2ytd
    PDB 2yte-2z30
    PDB 2z3g-2zet
    PDB 2zh0-3a32
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    PDB 3ls1-3m1n
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    PDB 3pki-3r0d
    PDB 3rj7-3t74
    PDB 3t87-3u9g
    PDB 3ua7-3v24
    PDB 3v25-4agl
    PDB 4agm-4dih
    PDB 4dii-4efs
    PDB 4eg2-4fc8
    PDB 4fgm-6tli
    PDB 6tmn-9nse

Zinc in the structure of Structural Basis For the Broad-Spectrum Inhibition of Metallo-{Beta}- Lactamases: L1- IS38 Complex (pdb 2qdt)






The binding sites of Zinc atom in the structure of Structural Basis For the Broad-Spectrum Inhibition of Metallo-{Beta}- Lactamases: L1- IS38 Complex (pdb code 2qdt). This binding sites where shown with 5.0 Angstroms radius around Zinc atom.
The 2qdt structure was solved by G.GARAU, O.DIDEBERG, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)26.5-2.0
Space groupP6422
a (A)105.319
b (A)105.319
c (A)97.960
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)17
Rfree (%)19.2


Zinc Binding Sites:

Zinc binding site 1 out of 4 in 2qdt


Zinc binding site 1 out of 4 in 2qdt
Click to enlarge
stereopicture of Zinc binding site 1 out of 4 in 2qdt
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Zinc in the PDB 2qdt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His84, A: His86, A: Asp88, A: His89, A: Phe124, A: His160, A: Ser185, A: Zn402, A: I38501, A: Hoh606,

conact list:


AtomAtomDistance (A)
ZnNE2 A:His842.10
ZnND1 A:His844.09
ZnCD2 A:His842.99
ZnCE1 A:His843.06
ZnCG A:His844.09
ZnNE2 A:His864.19
ZnCB A:His863.58
ZnND1 A:His862.14
ZnCD2 A:His864.28
ZnCE1 A:His863.04
ZnCG A:His863.19
ZnOD1 A:Asp884.35
ZnNE2 A:His894.25
ZnCD2 A:His894.18
ZnCE2 A:Phe1244.94
ZnNE2 A:His1602.03
ZnND1 A:His1604.15
ZnCD2 A:His1602.90
ZnCE1 A:His1603.10
ZnCG A:His1604.09
ZnOG A:Ser1854.85
ZnZN A:Zn4023.74
ZnS A:I385012.29
ZnC1 A:I385013.17
ZnC2 A:I385014.59
ZnO A:Hoh6064.78

interactive model:


Zinc binding site 2 out of 4 in 2qdt


Zinc binding site 2 out of 4 in 2qdt
Click to enlarge
stereopicture of Zinc binding site 2 out of 4 in 2qdt
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Zinc in the PDB 2qdt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Trp17, A: His84, A: Asp88, A: His89, A: Ser185, A: His225, A: Zn401, A: I38501, A: Hoh606,

conact list:


AtomAtomDistance (A)
ZnCZ3 A:Trp174.99
ZnNE2 A:His844.32
ZnCE1 A:His844.51
ZnCB A:Asp884.15
ZnOD2 A:Asp882.03
ZnOD1 A:Asp882.86
ZnCG A:Asp882.75
ZnNE2 A:His892.06
ZnND1 A:His894.04
ZnCD2 A:His893.04
ZnCE1 A:His892.95
ZnCG A:His894.11
ZnOG A:Ser1855.00
ZnNE2 A:His2252.08
ZnND1 A:His2254.12
ZnCD2 A:His2253.09
ZnCE1 A:His2253.00
ZnCG A:His2254.20
ZnZN A:Zn4013.74
ZnS A:I385012.33
ZnO62 A:I385014.89
ZnC1 A:I385013.24
ZnC3 A:I385014.18
ZnC2 A:I385013.49
ZnN4 A:I385013.87
ZnO A:Hoh6064.24

interactive model:


Zinc binding site 3 out of 4 in 2qdt


Zinc binding site 3 out of 4 in 2qdt
Click to enlarge
stereopicture of Zinc binding site 3 out of 4 in 2qdt
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Zinc in the PDB 2qdt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His29, A: Zn403,

conact list:


AtomAtomDistance (A)
ZnNE2 A:His291.28
ZnNE2 A:His291.77
ZnCB A:His294.92
ZnND1 A:His293.28
ZnND1 A:His292.64
ZnCD2 A:His292.49
ZnCD2 A:His293.09
ZnCE1 A:His292.14
ZnCE1 A:His291.34
ZnCG A:His293.46
ZnCG A:His293.46
ZnZN A:Zn4030.00
ZnZN A:Zn4033.59

interactive model:


Zinc binding site 4 out of 4 in 2qdt


Zinc binding site 4 out of 4 in 2qdt
Click to enlarge
stereopicture of Zinc binding site 4 out of 4 in 2qdt
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Zinc in the PDB 2qdt. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Zinc atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp28, A: His29, A: Thr172, A: Zn403,

conact list:


AtomAtomDistance (A)
ZnCB A:Asp284.58
ZnOD2 A:Asp284.04
ZnCG A:Asp284.60
ZnNE2 A:His294.22
ZnNE2 A:His294.14
ZnND1 A:His294.84
ZnCE1 A:His293.72
ZnCE1 A:His294.37
ZnOG1 A:Thr1724.34
ZnZN A:Zn4033.59
ZnZN A:Zn4030.00

interactive model:




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