Zinc in PDB 2q02: Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution

The structure of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution, PDB code: 2q02 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.39 / 2.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	94.500, 95.230, 136.710, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 22.8

The structure of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Zinc atom in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution (pdb code 2q02). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution, PDB code: 2q02:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:45.1 occ:1.00 OD2 A:ASP169 2.0 43.8 1.0 OE2 A:GLU138 2.1 51.9 1.0 OE1 A:GLU244 2.1 55.7 1.0 ND1 A:HIS196 2.1 42.2 1.0 O1 A:UNL304 2.6 54.2 1.0 CD A:GLU138 3.0 47.0 1.0 CE1 A:HIS196 3.1 40.2 1.0 CD A:GLU244 3.1 49.7 1.0 CG A:ASP169 3.1 45.5 1.0 CG A:HIS196 3.2 40.5 1.0 OE1 A:GLU138 3.2 47.4 1.0 OE2 A:GLU244 3.4 52.9 1.0 CB A:HIS196 3.5 44.4 1.0 CB A:ASP169 3.7 45.4 1.0 O2 A:UNL304 4.0 35.5 1.0 NH2 A:ARG214 4.1 47.6 1.0 OD1 A:ASP169 4.2 47.1 1.0 NE2 A:HIS196 4.2 47.4 1.0 CD2 A:HIS196 4.3 45.9 1.0 CG A:GLU138 4.4 46.8 1.0 CG A:GLU244 4.5 48.5 1.0 CD2 A:LEU167 4.6 46.4 1.0 CD2 A:HIS172 4.6 43.2 1.0 NH1 A:ARG214 4.7 53.4 1.0 CB A:GLU244 4.9 46.6 1.0 CA A:ASP169 4.9 45.5 1.0 CZ A:ARG214 4.9 52.2 1.0 NE2 A:HIS172 4.9 47.5 1.0 CA A:HIS196 5.0 43.5 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:56.0 occ:1.00 OD2 A:ASP126 2.1 52.1 1.0 CG A:ASP126 2.9 49.1 1.0 CL A:CL302 3.0 53.1 1.0 CL A:CL303 3.1 58.5 1.0 OD1 A:ASP126 3.2 49.9 1.0 O A:LYS122 4.2 44.3 1.0 CB A:ASP126 4.3 46.0 1.0 C A:LYS122 4.7 44.6 1.0 CB A:LYS122 4.8 46.1 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn300 b:44.0 occ:1.00 OE2 B:GLU138 2.0 53.2 1.0 OE1 B:GLU244 2.0 55.0 1.0 OD2 B:ASP169 2.0 48.3 1.0 ND1 B:HIS196 2.1 44.9 1.0 O1 B:UNL305 2.4 40.9 1.0 CD B:GLU138 3.0 47.3 1.0 CE1 B:HIS196 3.0 42.2 1.0 CD B:GLU244 3.0 49.6 1.0 CG B:HIS196 3.1 40.6 1.0 CG B:ASP169 3.1 46.0 1.0 OE1 B:GLU138 3.2 47.3 1.0 OE2 B:GLU244 3.3 51.2 1.0 CB B:HIS196 3.5 43.8 1.0 CB B:ASP169 3.7 44.9 1.0 NH2 B:ARG214 4.0 49.8 1.0 O2 B:UNL305 4.0 33.5 1.0 NE2 B:HIS196 4.1 49.6 1.0 OD1 B:ASP169 4.2 44.2 1.0 CD2 B:HIS196 4.2 42.1 1.0 CG B:GLU138 4.3 44.0 1.0 CG B:GLU244 4.4 48.6 1.0 CD2 B:HIS172 4.7 43.6 1.0 NH1 B:ARG214 4.8 50.3 1.0 CD2 B:LEU167 4.8 47.3 1.0 CB B:GLU244 4.8 47.7 1.0 CA B:ASP169 4.8 45.3 1.0 CZ B:ARG214 4.9 50.2 1.0 CE2 B:PHE246 5.0 49.0 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn301 b:55.9 occ:1.00 OD2 B:ASP126 2.3 51.9 1.0 CL B:CL303 2.8 58.0 1.0 CG B:ASP126 3.0 49.9 1.0 OD1 B:ASP126 3.1 48.8 1.0 CL B:CL304 3.5 70.8 1.0 O B:LYS122 4.1 44.1 1.0 CB B:ASP126 4.4 46.6 1.0 C B:LYS122 4.7 44.8 1.0 CB B:LYS122 4.7 45.0 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn300 b:36.8 occ:1.00 OE2 C:GLU138 2.0 50.2 1.0 OD2 C:ASP169 2.0 42.0 1.0 ND1 C:HIS196 2.1 42.4 1.0 OE1 C:GLU244 2.1 50.6 1.0 O3 C:UNL303 2.3 32.8 1.0 CD C:GLU138 3.0 47.7 1.0 CD C:GLU244 3.0 47.6 1.0 CE1 C:HIS196 3.0 40.6 1.0 CG C:HIS196 3.1 40.1 1.0 CG C:ASP169 3.1 45.6 1.0 OE2 C:GLU244 3.3 52.8 1.0 OE1 C:GLU138 3.3 50.7 1.0 CB C:HIS196 3.4 44.7 1.0 CB C:ASP169 3.6 44.3 1.0 O4 C:UNL303 3.6 21.8 1.0 NH2 C:ARG214 4.0 50.1 1.0 NE2 C:HIS196 4.1 45.8 1.0 CD2 C:HIS196 4.2 42.9 1.0 OD1 C:ASP169 4.2 46.4 1.0 CG C:GLU138 4.3 46.5 1.0 CG C:GLU244 4.4 49.1 1.0 CD2 C:HIS172 4.5 46.9 1.0 CD2 C:LEU167 4.6 44.9 1.0 NH1 C:ARG214 4.7 50.8 1.0 NE2 C:HIS172 4.8 45.6 1.0 CA C:ASP169 4.8 45.6 1.0 CB C:GLU244 4.8 46.7 1.0 CZ C:ARG214 4.9 49.9 1.0 CA C:HIS196 4.9 44.8 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Xylose Isomerase Domain Containing Protein (STM4435) From Salmonella Typhimurium LT2 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn300 b:37.1 occ:1.00 OD2 D:ASP169 2.0 49.6 1.0 OE2 D:GLU138 2.0 52.0 1.0 OE1 D:GLU244 2.1 51.0 1.0 ND1 D:HIS196 2.1 42.5 1.0 O3 D:UNL302 2.2 32.3 1.0 CD D:GLU244 3.0 46.0 1.0 CD D:GLU138 3.1 46.3 1.0 CG D:HIS196 3.1 41.5 1.0 CE1 D:HIS196 3.1 39.5 1.0 CG D:ASP169 3.1 46.2 1.0 OE2 D:GLU244 3.3 49.8 1.0 CB D:HIS196 3.3 44.0 1.0 OE1 D:GLU138 3.4 48.5 1.0 CB D:ASP169 3.7 46.1 1.0 O1 D:UNL302 3.8 28.5 1.0 NH2 D:ARG214 4.1 47.9 1.0 NE2 D:HIS196 4.2 48.0 1.0 OD1 D:ASP169 4.2 47.7 1.0 CD2 D:HIS196 4.2 42.8 1.0 CG D:GLU244 4.4 49.1 1.0 CG D:GLU138 4.4 45.7 1.0 O D:HOH370 4.4 40.3 1.0 CD2 D:LEU167 4.5 46.3 1.0 CD2 D:HIS172 4.6 45.0 1.0 NH1 D:ARG214 4.7 51.2 1.0 CB D:GLU244 4.8 47.8 1.0 CA D:ASP169 4.8 45.4 1.0 NE2 D:HIS172 4.9 49.4 1.0 CA D:HIS196 4.9 44.2 1.0 CZ D:ARG214 4.9 50.7 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.