Zinc in PDB 2nx9: Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae

All present enzymatic activity of Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae:
4.1.1.3;

The structure of Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae, PDB code: 2nx9 was solved by R.Studer, P.Dimroth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.00 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	90.825, 91.655, 116.422, 90.00, 90.00, 90.00
R / Rfree (%)	23.2 / 28.4

The binding sites of Zinc atom in the Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae (pdb code 2nx9). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae, PDB code: 2nx9:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:34.5 occ:1.00 O A:HOH696 2.1 21.4 1.0 O A:HOH695 2.2 27.0 1.0 NE2 A:HIS209 2.2 2.0 1.0 OD2 A:ASP17 2.2 6.7 1.0 O A:HOH602 2.3 22.3 1.0 NE2 A:HIS207 2.3 10.3 1.0 CE1 A:HIS207 3.1 2.0 1.0 CE1 A:HIS209 3.1 9.0 1.0 CG A:ASP17 3.2 8.2 1.0 CD2 A:HIS209 3.2 13.6 1.0 CD2 A:HIS207 3.3 9.1 1.0 OD1 A:ASP17 3.5 11.4 1.0 O A:HOH831 4.1 22.4 1.0 NE2 A:HIS243 4.1 2.9 1.0 ND1 A:HIS207 4.3 2.0 1.0 CG A:HIS207 4.4 9.8 1.0 ND1 A:HIS209 4.4 5.2 1.0 CG A:HIS209 4.4 2.8 1.0 CB A:ASP17 4.4 10.2 1.0 NH2 A:ARG16 4.5 5.0 1.0 O A:HOH656 4.7 10.6 1.0 CA A:MET180 5.0 19.7 1.0 CD2 A:HIS243 5.0 2.9 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn602 b:36.8 occ:1.00 OD2 B:ASP17 2.0 10.2 1.0 NE2 B:HIS209 2.1 6.7 1.0 O B:HOH678 2.2 29.9 1.0 O B:HOH624 2.2 19.0 1.0 O B:HOH811 2.2 32.6 1.0 NE2 B:HIS207 2.3 7.1 1.0 CE1 B:HIS209 3.1 13.0 1.0 CD2 B:HIS209 3.2 14.2 1.0 CG B:ASP17 3.2 14.3 1.0 CE1 B:HIS207 3.2 13.0 1.0 CD2 B:HIS207 3.4 12.9 1.0 OD1 B:ASP17 3.7 12.6 1.0 O B:HOH677 4.1 25.9 1.0 NE2 B:HIS243 4.1 12.7 1.0 ND1 B:HIS209 4.3 10.1 1.0 CG B:HIS209 4.4 10.4 1.0 CB B:ASP17 4.4 11.3 1.0 ND1 B:HIS207 4.4 14.9 1.0 NH2 B:ARG16 4.5 11.0 1.0 CG B:HIS207 4.5 13.3 1.0 CG B:MET180 4.6 30.9 1.0 O B:HOH620 4.7 16.1 1.0 CA B:MET180 4.8 24.5 1.0 CE1 B:HIS243 5.0 11.3 1.0

R.Studer, P.Dahinden, W.W.Wang, Y.Auchli, X.D.Li, P.Dimroth. Crystal Structure of the Carboxyltransferase Domain of the Oxaloacetate Decarboxylase Na(+) Pump From Vibrio Cholerae. J.Mol.Biol. V. 367 547 2007.
ISSN: ISSN 0022-2836
PubMed: 17270211
DOI: 10.1016/J.JMB.2006.12.035