Zinc in PDB 2g7z: Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids

The structure of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids, PDB code: 2g7z was solved by B.Nocek, L.Volkart, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	74.126, 74.093, 128.597, 90.00, 90.00, 90.00
R / Rfree (%)	16.5 / 20.7

The structure of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Zinc atom in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids (pdb code 2g7z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 16 binding sites of Zinc where determined in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids, PDB code: 2g7z:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6001 b:14.0 occ:1.00 O A:HOH9143 1.8 10.1 1.0 OE1 A:GLU15 2.0 12.5 1.0 CL A:CL7001 2.4 11.7 1.0 CD A:GLU15 2.9 9.2 1.0 CG A:GLU15 3.4 7.1 1.0 OE2 A:GLU15 4.0 12.4 1.0 OG A:SER255 4.1 11.6 1.0 CB A:GLU15 4.1 6.9 1.0 CD1 A:LEU18 4.3 10.5 1.0 O A:HOH9165 4.5 37.5 1.0 CD2 A:LEU18 4.6 7.6 1.0 N A:GLU15 4.7 8.5 1.0 CB A:SER255 4.7 11.0 1.0 NZ A:LYS125 4.7 9.8 1.0 CD1 A:LEU257 4.9 4.6 1.0

Zinc binding site 2 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6002 b:19.8 occ:1.00 ND1 A:HIS48 2.1 12.9 1.0 O A:HOH9150 2.2 2.7 1.0 O A:HOH9359 2.2 21.0 1.0 CE1 A:HIS48 3.0 14.3 1.0 CG A:HIS48 3.1 13.8 1.0 CB A:HIS48 3.5 12.4 1.0 O A:HOH9211 3.7 18.3 1.0 NE2 A:HIS48 4.1 14.9 1.0 CD2 A:HIS48 4.2 11.8 1.0 CB A:GLU45 4.5 13.5 1.0 CG A:GLU45 4.8 18.0 1.0 CA A:HIS48 4.9 12.3 1.0

Zinc binding site 3 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6003 b:34.3 occ:1.00 OD1 A:ASP84 2.1 18.7 1.0 O B:HOH8346 2.2 28.4 1.0 O A:HOH9306 2.3 29.2 1.0 CE1 B:HIS252 2.6 25.5 1.0 NE2 B:HIS252 2.8 25.8 1.0 CG A:ASP84 2.9 14.1 1.0 OD2 A:ASP84 3.1 17.6 1.0 O3 B:GOL2649 3.2 46.8 1.0 ND1 B:HIS252 3.7 26.4 1.0 OD1 B:ASN251 4.0 29.9 1.0 CD2 B:HIS252 4.0 26.0 1.0 C3 B:GOL2649 4.1 46.9 1.0 O A:THR83 4.3 13.5 1.0 CB A:PRO111 4.4 12.2 1.0 CB A:ASP84 4.4 13.2 1.0 CD2 A:LEU141 4.4 11.9 1.0 CG B:HIS252 4.5 25.8 1.0 O A:HOH9200 4.6 18.0 1.0 ND2 B:ASN251 4.8 29.8 1.0 CG B:ASN251 4.9 28.4 1.0

Zinc binding site 4 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6004 b:74.2 occ:1.00 O A:HOH9360 2.2 40.6 1.0 O A:HOH9316 2.3 28.0 1.0 OE2 A:GLU17 2.4 15.1 1.0 O A:HOH9307 2.8 34.0 1.0 CD A:GLU17 3.2 12.8 1.0 OE1 A:GLU17 3.2 11.2 1.0 O A:HOH9168 3.6 33.9 1.0 OE2 A:GLU15 4.4 12.4 1.0 CG A:GLU17 4.6 10.6 1.0

Zinc binding site 5 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6005 b:13.8 occ:1.00 O B:HOH8326 1.8 5.9 1.0 OE1 A:GLU106 2.0 13.9 1.0 OE2 B:GLU15 2.0 14.0 1.0 O B:HOH8139 2.2 2.0 1.0 CD A:GLU106 2.7 15.6 1.0 OE2 A:GLU106 2.8 21.1 1.0 CD B:GLU15 3.0 11.8 1.0 CG B:GLU15 3.4 8.2 1.0 O A:HOH9238 3.8 23.6 1.0 NH1 A:ARG102 3.8 14.7 1.0 OE1 B:GLU15 4.1 12.8 1.0 OG B:SER255 4.1 12.2 1.0 CB B:GLU15 4.2 8.0 1.0 CG A:GLU106 4.2 14.4 1.0 CD1 B:LEU18 4.3 8.7 1.0 CD2 B:LEU18 4.7 6.4 1.0 CB B:SER255 4.7 10.9 1.0 N B:GLU15 4.7 9.5 1.0 CB A:GLU106 4.7 12.2 1.0 NZ B:LYS125 4.7 5.6 1.0 O A:HOH9278 4.7 31.5 1.0 CD1 B:LEU257 5.0 4.9 1.0

Zinc binding site 6 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6006 b:23.9 occ:1.00 OE1 A:GLU227 2.0 13.5 1.0 O A:HOH9374 2.2 2.0 1.0 O A:HOH9137 2.5 41.3 1.0 CD A:GLU227 2.6 14.3 1.0 OE2 A:GLU227 2.7 13.8 1.0 CG A:GLU227 4.0 15.7 1.0 O A:HOH9290 4.1 11.3 1.0 CD1 A:PHE126 4.2 8.1 1.0 NH1 A:ARG277 4.7 20.1 1.0 CE1 A:PHE126 4.7 10.4 1.0 CE A:LYS125 4.8 7.9 1.0 CB A:GLU227 4.8 15.1 1.0 O A:HOH9240 4.8 23.4 1.0 CA A:PHE126 4.9 7.3 1.0

Zinc binding site 7 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6007 b:93.7 occ:1.00 OE2 A:GLU143 2.5 22.2 1.0 OE1 A:GLU143 2.7 16.8 1.0 CD A:GLU143 2.9 17.9 1.0 O A:HOH9309 3.0 50.2 1.0 O A:HOH9347 4.2 36.9 1.0 CG A:GLU143 4.4 16.0 1.0 O A:HOH9233 4.8 45.4 1.0 CA A:ALA139 4.8 15.8 1.0 N A:SER140 4.9 14.4 1.0

Zinc binding site 8 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6008 b:23.3 occ:1.00 OE1 B:GLU227 2.0 12.5 1.0 OE2 A:GLU109 2.0 19.3 1.0 O B:HOH8342 2.2 28.4 1.0 O A:HOH9139 2.2 2.0 1.0 CD B:GLU227 2.5 14.2 1.0 OE2 B:GLU227 2.6 14.7 1.0 CD A:GLU109 2.7 16.7 1.0 OE1 A:GLU109 2.8 16.9 1.0 O A:HOH9199 3.7 26.3 1.0 O A:GLU106 3.9 12.6 1.0 CG B:GLU227 4.0 15.0 1.0 O A:HOH9238 4.0 23.6 1.0 O B:HOH8305 4.2 12.5 1.0 CG A:GLU109 4.2 14.1 1.0 CD1 B:PHE126 4.2 7.3 1.0 O B:HOH8347 4.3 34.9 1.0 NH2 B:ARG277 4.7 19.7 1.0 CE1 B:PHE126 4.8 9.3 1.0 CE B:LYS125 4.8 6.2 1.0 C A:GLU106 4.8 11.4 1.0 CB B:GLU227 4.9 14.9 1.0 CA B:PHE126 4.9 7.2 1.0 O B:HOH8232 4.9 29.7 1.0

Zinc binding site 9 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6011 b:36.4 occ:1.00 O A:HOH9366 2.0 23.9 1.0 OD2 A:ASP23 2.0 18.9 1.0 O A:HOH9365 2.3 29.4 1.0 O A:HOH9377 2.6 29.8 1.0 O A:HOH9198 2.7 32.4 1.0 CG A:ASP23 2.8 13.6 1.0 OD1 A:ASP23 3.0 15.6 1.0 NZ A:LYS5 3.9 8.7 1.0 CE A:LYS5 4.2 9.8 1.0 CB A:ASP23 4.2 11.7 1.0 CD A:LYS5 4.6 10.0 1.0 CD A:LYS80 4.8 22.2 1.0

Zinc binding site 10 out of 16 in the Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Conserved Degv-Like Protein of Unknown Function From Streptococcus Pyogenes M1 Gas Binds Long-Chain Fatty Acids within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn6012 b:41.8 occ:1.00 OE1 A:GLU269 2.0 29.5 1.0 OE1 A:GLU235 2.0 28.7 1.0 O A:HOH9149 2.2 32.5 1.0 OE2 A:GLU235 2.6 25.6 1.0 CD A:GLU235 2.6 22.9 1.0 O A:HOH9367 2.9 38.9 1.0 CD A:GLU269 3.0 22.9 1.0 OE2 A:GLU269 3.6 22.7 1.0 O A:HOH9375 4.0 23.4 1.0 CG A:GLU235 4.1 19.7 1.0 CG A:GLU269 4.2 18.8 1.0 NZ A:LYS54 4.2 23.6 1.0 N A:GLU235 4.4 15.1 1.0 CA A:GLY234 4.5 13.6 1.0 CE A:LYS54 4.6 22.6 1.0 CB A:GLU269 4.6 14.1 1.0 C A:GLY234 4.8 14.3 1.0 CB A:GLU235 4.9 16.5 1.0 CD A:LYS54 4.9 17.0 1.0

B.Nocek, L.Volkart, S.Clancy, A.Joachimiak. Conserved Hypothetical Protein From Streptococcus Pyogenes M1 Gas Discloses Long-Fatty Acid (Heptadecanoic Acid) Binding Function To Be Published.