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Zinc in PDB 2eh1: Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus

Protein crystallography data

The structure of Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus, PDB code: 2eh1 was solved by P.H.Rehse, S.Yokoyama, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.90 / 2.25
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.778, 71.778, 80.833, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 22.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus (pdb code 2eh1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus, PDB code: 2eh1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2eh1

Go back to Zinc Binding Sites List in 2eh1
Zinc binding site 1 out of 2 in the Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn102

b:87.4
occ:1.00
ND1 A:HIS86 2.3 49.3 1.0
O A:HOH136 2.5 55.3 1.0
O A:HOH125 2.6 38.9 1.0
CG A:HIS86 3.1 44.6 1.0
CB A:HIS86 3.2 36.3 1.0
CE1 A:HIS86 3.4 47.2 1.0
CG1 A:VAL61 4.1 20.5 1.0
CD2 A:HIS86 4.3 48.1 1.0
NE2 A:HIS86 4.4 48.9 1.0
CA A:HIS86 4.8 31.5 1.0

Zinc binding site 2 out of 2 in 2eh1

Go back to Zinc Binding Sites List in 2eh1
Zinc binding site 2 out of 2 in the Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:42.0
occ:1.00
NE2 B:HIS86 2.0 44.5 1.0
OD2 B:ASP59 2.3 24.7 1.0
O B:HOH109 2.3 21.2 1.0
O B:HOH108 2.5 22.7 1.0
CD2 B:HIS86 2.8 39.5 1.0
CE1 B:HIS86 3.2 47.4 1.0
CG B:ASP59 3.3 27.7 1.0
CB B:ASP59 3.7 26.0 1.0
CG B:HIS86 4.0 39.9 1.0
ND1 B:HIS86 4.2 44.7 1.0
OD1 B:ASP59 4.4 29.1 1.0
CG1 B:VAL61 4.8 20.8 1.0
O B:PRO87 5.0 38.4 1.0

Reference:

P.H.Rehse, S.Yokoyama. Stage V Sporolation Protein S (Spovs) From Thermus Thermophilus To Be Published.
Page generated: Wed Oct 16 23:08:34 2024

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