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Zinc in PDB 2e1b: Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii

Enzymatic activity of Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii

All present enzymatic activity of Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii:
3.1.1.29; 6.1.1.7;

Protein crystallography data

The structure of Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii, PDB code: 2e1b was solved by R.Fukunaga, S.Yokoyama, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.11 / 2.70
Space group P 62
Cell size a, b, c (Å), α, β, γ (°) 80.223, 80.223, 72.269, 90.00, 90.00, 120.00
R / Rfree (%) 22.7 / 31.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii (pdb code 2e1b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii, PDB code: 2e1b:

Zinc binding site 1 out of 1 in 2e1b

Go back to Zinc Binding Sites List in 2e1b
Zinc binding site 1 out of 1 in the Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:0.5
occ:1.00
NE2 A:HIS99 2.7 82.1 1.0
SG A:CYS182 2.8 88.4 1.0
NE2 A:HIS103 3.4 57.1 1.0
CD2 A:HIS99 3.5 65.3 1.0
CE1 A:HIS99 3.8 79.3 1.0
CD2 A:HIS103 3.8 38.1 1.0
CB A:CYS182 3.8 95.7 1.0
O A:GLY42 4.4 84.0 1.0
CE1 A:HIS103 4.6 59.4 1.0
CG A:HIS99 4.7 67.4 1.0
ND1 A:HIS99 4.8 76.7 1.0
CA A:CYS182 4.8 86.3 1.0
OG A:SER123 4.9 77.5 1.0

Reference:

R.Fukunaga, S.Yokoyama. Structure of the Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Acta Crystallogr.,Sect.D V. 63 390 2007.
ISSN: ISSN 0907-4449
PubMed: 17327676
DOI: 10.1107/S090744490605640X
Page generated: Wed Dec 16 03:22:25 2020

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