Zinc in PDB 1mzb: Ferric Uptake Regulator
Protein crystallography data
The structure of Ferric Uptake Regulator, PDB code: 1mzb
was solved by
E.Pohl,
M.L.Vasil,
J.C.Haller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
12.00 /
1.80
|
Space group
|
I 41 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.300,
63.300,
180.100,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.6 /
25.4
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Ferric Uptake Regulator
(pdb code 1mzb). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the
Ferric Uptake Regulator, PDB code: 1mzb:
Jump to Zinc binding site number:
1;
2;
3;
4;
Zinc binding site 1 out
of 4 in 1mzb
Go back to
Zinc Binding Sites List in 1mzb
Zinc binding site 1 out
of 4 in the Ferric Uptake Regulator
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Ferric Uptake Regulator within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:32.2
occ:1.00
|
NE2
|
A:HIS86
|
2.0
|
32.2
|
1.0
|
OE2
|
A:GLU107
|
2.0
|
32.3
|
1.0
|
NE2
|
A:HIS124
|
2.2
|
28.8
|
1.0
|
OD2
|
A:ASP88
|
2.2
|
30.6
|
1.0
|
O
|
A:HOH1086
|
2.3
|
30.4
|
1.0
|
OD1
|
A:ASP88
|
2.4
|
37.8
|
1.0
|
CG
|
A:ASP88
|
2.6
|
28.1
|
1.0
|
CE1
|
A:HIS86
|
2.8
|
47.4
|
1.0
|
CD
|
A:GLU107
|
2.8
|
31.8
|
1.0
|
OE1
|
A:GLU107
|
3.0
|
32.1
|
1.0
|
CD2
|
A:HIS124
|
3.1
|
25.4
|
1.0
|
CD2
|
A:HIS86
|
3.1
|
45.2
|
1.0
|
CE1
|
A:HIS124
|
3.2
|
28.9
|
1.0
|
O
|
A:HOH1047
|
3.8
|
39.7
|
1.0
|
ND1
|
A:HIS86
|
4.0
|
47.1
|
1.0
|
CB
|
A:ASP88
|
4.1
|
27.9
|
1.0
|
CG
|
A:HIS86
|
4.2
|
46.6
|
1.0
|
CG
|
A:GLU107
|
4.2
|
30.1
|
1.0
|
CG
|
A:HIS124
|
4.3
|
26.9
|
1.0
|
NE2
|
A:GLN110
|
4.3
|
30.3
|
1.0
|
ND1
|
A:HIS124
|
4.3
|
29.7
|
1.0
|
O
|
A:HOH1006
|
4.6
|
34.1
|
1.0
|
OE1
|
A:GLN110
|
4.7
|
31.9
|
1.0
|
N
|
A:ASP88
|
4.9
|
37.8
|
1.0
|
CD
|
A:GLN110
|
4.9
|
31.6
|
1.0
|
CA
|
A:ASP88
|
4.9
|
32.7
|
1.0
|
|
Zinc binding site 2 out
of 4 in 1mzb
Go back to
Zinc Binding Sites List in 1mzb
Zinc binding site 2 out
of 4 in the Ferric Uptake Regulator
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Ferric Uptake Regulator within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn202
b:31.3
occ:1.00
|
NE2
|
A:HIS32
|
2.0
|
29.8
|
1.0
|
OE1
|
A:GLU80
|
2.0
|
42.5
|
1.0
|
NE2
|
A:HIS89
|
2.0
|
23.9
|
1.0
|
OE2
|
A:GLU100
|
2.2
|
48.5
|
1.0
|
CD2
|
A:HIS32
|
2.8
|
36.1
|
1.0
|
CD
|
A:GLU80
|
2.8
|
40.6
|
1.0
|
OE2
|
A:GLU80
|
2.8
|
45.7
|
1.0
|
CD2
|
A:HIS89
|
3.0
|
25.1
|
1.0
|
CE1
|
A:HIS89
|
3.1
|
28.0
|
1.0
|
CD
|
A:GLU100
|
3.1
|
50.7
|
1.0
|
CE1
|
A:HIS32
|
3.2
|
36.6
|
1.0
|
CG
|
A:GLU100
|
3.3
|
44.4
|
1.0
|
CG
|
A:HIS32
|
4.0
|
34.7
|
1.0
|
CG
|
A:HIS89
|
4.1
|
25.9
|
1.0
|
ND1
|
A:HIS89
|
4.2
|
25.9
|
1.0
|
ND1
|
A:HIS32
|
4.2
|
36.2
|
1.0
|
CG
|
A:GLU80
|
4.2
|
37.6
|
1.0
|
OE1
|
A:GLU100
|
4.3
|
52.2
|
1.0
|
CB
|
A:GLU100
|
4.8
|
41.2
|
1.0
|
CB
|
A:GLU80
|
4.8
|
33.0
|
1.0
|
CB
|
A:HIS87
|
5.0
|
48.3
|
1.0
|
CZ
|
A:PHE72
|
5.0
|
28.2
|
1.0
|
|
Zinc binding site 3 out
of 4 in 1mzb
Go back to
Zinc Binding Sites List in 1mzb
Zinc binding site 3 out
of 4 in the Ferric Uptake Regulator
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of Ferric Uptake Regulator within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn203
b:26.4
occ:1.00
|
OD2
|
A:ASP73
|
1.9
|
26.1
|
1.0
|
ND1
|
A:HIS76
|
2.1
|
31.2
|
1.0
|
CG
|
A:ASP73
|
2.7
|
27.7
|
1.0
|
OD1
|
A:ASP73
|
2.9
|
27.1
|
1.0
|
CE1
|
A:HIS76
|
3.0
|
28.2
|
1.0
|
CG
|
A:HIS76
|
3.2
|
29.2
|
1.0
|
CB
|
A:HIS76
|
3.6
|
28.3
|
1.0
|
O
|
A:HOH1004
|
3.9
|
29.6
|
1.0
|
N
|
A:HIS76
|
3.9
|
25.8
|
1.0
|
NE2
|
A:HIS76
|
4.2
|
32.0
|
1.0
|
CB
|
A:ASP73
|
4.2
|
27.8
|
1.0
|
CD2
|
A:HIS76
|
4.3
|
26.7
|
1.0
|
C
|
A:GLY75
|
4.3
|
26.4
|
1.0
|
CA
|
A:HIS76
|
4.3
|
24.4
|
1.0
|
CA
|
A:GLY75
|
4.6
|
25.4
|
1.0
|
O
|
A:GLY75
|
4.8
|
23.9
|
1.0
|
O
|
A:HOH1002
|
4.8
|
26.1
|
1.0
|
N
|
A:GLY75
|
4.8
|
27.2
|
1.0
|
|
Zinc binding site 4 out
of 4 in 1mzb
Go back to
Zinc Binding Sites List in 1mzb
Zinc binding site 4 out
of 4 in the Ferric Uptake Regulator
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of Ferric Uptake Regulator within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn204
b:24.6
occ:0.50
|
OE2
|
A:GLU105
|
2.0
|
46.3
|
1.0
|
O
|
A:HOH1088
|
2.4
|
6.5
|
0.5
|
CD
|
A:GLU105
|
2.7
|
42.4
|
1.0
|
CG
|
A:GLU105
|
2.8
|
36.7
|
1.0
|
OE1
|
A:GLU105
|
3.9
|
45.4
|
1.0
|
O
|
A:HOH1114
|
4.1
|
53.9
|
1.0
|
CB
|
A:GLU105
|
4.4
|
30.4
|
1.0
|
O
|
A:GLU105
|
4.5
|
30.6
|
1.0
|
CB
|
A:ARG109
|
4.5
|
26.7
|
1.0
|
C
|
A:GLU105
|
4.7
|
30.1
|
1.0
|
CG
|
A:ARG109
|
4.8
|
28.5
|
1.0
|
CD
|
A:ARG109
|
4.8
|
32.2
|
1.0
|
|
Reference:
E.Pohl,
J.C.Haller,
A.Mijovilovich,
W.Meyer-Klaucke,
E.Garman,
M.L.Vasil.
Architecture of A Protein Central to Iron Homeostatis: Crystal Structure and Spectroscopic Analysis of the Ferric Uptake Regulator Mol.Microbiol. V. 47 903 2003.
ISSN: ISSN 0950-382X
PubMed: 12581348
DOI: 10.1046/J.1365-2958.2003.03337.X
Page generated: Wed Oct 16 17:08:14 2024
|